Saving spots as polygon currently fails

pelkmanslab / TissueMAPS-OLD

Old TissueMAPS code (until 2016); please use pelkmanslab/TissueMAPS instead.

http://github.com/pelkmanslba/TissueMAPS

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Saving spots as polygon currently fails #61

Open jluethi opened 7 years ago

jluethi commented 7 years ago

When I try to save spots detected with the detect blobs module as polygons, it fails with the following error message. When the Spots are saved in the output but not represented as polygons, the pipeline runs through.

screen shot 2017-04-12 at 14 51 36

I'm currently looking into it.