when 4 channels are present, create_jpgs generates RGB1.jpg and RGB2.jpg (same for IllCorrJPG);
however, only 1 plate overview is generated by merge_jpgs_per_plate. it randomly takes RGB1 OR RGB2;
It would be good to have 2 plate overviews, one using all RGB1.jpg, the second using all RGB2.jpg
when 4 channels are present, create_jpgs generates RGB1.jpg and RGB2.jpg (same for IllCorrJPG); however, only 1 plate overview is generated by merge_jpgs_per_plate. it randomly takes RGB1 OR RGB2; It would be good to have 2 plate overviews, one using all RGB1.jpg, the second using all RGB2.jpg
this can be solved by adding to the calls of merge_jpgs_per_plate('${JPGDIR}') the second input argument, which filters jpgs according to names. https://github.com/pelkmanslab/iBRAIN_BRUTUS/blob/master/iBRAIN/core/modules/create_jpgs.sh
can be seen and tested in this folder: biol_uzh_pelkmans_s8/Data/Users/Doris/TEST_DATA/20151103_CN_LINKS_RESUB/