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pemsley / coot

Software for macromolecular model-building
http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
GNU General Public License v3.0
113 stars 44 forks source link

Errors during the installation by Homebrew #109

Closed WarderSar closed 3 months ago

WarderSar commented 6 months ago

Hello. I was trying to install Coot on Ubuntu 22.04 according to this guide: https://github.com/pemsley/coot/issues/64#issuecomment-1212156477

During the installation I faced following errors. All of them I decided to ignore:

  1. ErrorDuringExecution: Failure while executing; patch -g 0 -f -p1 image

  2. BuildError: Failed executing: ./configure --prefix=/home/linuxbrew/.linuxbrew/Cellar/coot/HEAD-ab40c3c --with-enhanced-ligand-tools --with-boost=/home/linuxbrew/.linuxbrew/opt/boost --with-boost-libdir=/home/linuxbrew/.linuxbrew/opt/boost-python3/lib --with-rdkit-prefix=/home/linuxbrew/.linuxbrew/opt/rdkit --with-fftw-prefix=/home/linuxbrew/.linuxbrew/opt/clipper4coot/fftw2 --with-backward --with-libdw image

  3. BuildError: Failed executing: make image

  4. BuildError: Failed executing: make install image

After installation I have typed "coot", but got an error: Command 'coot' not found image I have tried this: https://github.com/pemsley/coot/issues/64#issuecomment-1212702552 but got the same error. I'm tired of trying to figuring out the problems. What should I do?

pemsley commented 6 months ago

Hello @WarderSar.

Please make sure that you are using the latest coot.rb file from @YoshitakaMo, mention later in that thread. Also note that almost all Homebrew users are using macOS.

The currently prefered method of installation of Coot 1.1 is this script: https://github.com/pemsley/coot/blob/main/build-it-3-3 If you want to try it, download from "Raw."

WarderSar commented 6 months ago

Hello @WarderSar.

Please make sure that you are using the latest coot.rb file from @YoshitakaMo, mention later in that thread. Also note that almost all Homebrew users are using macOS.

The currently prefered method of installation of Coot 1.1 is this script: https://github.com/pemsley/coot/blob/main/build-it-3-3 If you want to try it, download from "Raw."

Thank you for your answer, Mr. Emsley. I have just tried out the script. But the script stops while "guile-config - Guile version 2.2.7".

After that I have tried to type "coot". But got "Command 'coot' not found"

So there is no exact error as I see.

So the full output is:

bash build-it-3-3 ; notify-send 'DONE' ; aplay /usr/share/sounds/speech-dispatcher/test.wav ==================================================== add test for SWIG version ==================================================== add test for CMake version PATH is now: /home/wardersar/autobuild/Linux-wardersar-BBR-WAX9-pre-release-gtk3/bin:/home/wardersar/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc AUTOBUILD_BUILD is /home/wardersar/autobuild/building AUTOBUILD_SOURCES is /home/wardersar/autobuild/building/sources INFO:: redirecting std output to /home/wardersar/public_html/build-logs/Linux-wardersar-BBR-WAX9/build.log awk: not an option: --version ls: cannot access '/home/wardersar/autobuild/Linux-wardersar-BBR-WAX9-gtk3/include/ltdl.h': No such file or directory build-it-3-3: line 2101: /home/wardersar/autobuild/Linux-wardersar-BBR-WAX9-gtk3/bin/gsl-config: No such file or directory URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:49:44-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/libccp4-6.5.1.tar.gz Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 947521 (925K) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/libccp4-6.5.1.tar.gz’

libccp4-6.5.1.tar 100%[============>] 925,31K 1,05MB/s in 0,9s

2023-11-13 08:49:45 (1,05 MB/s) - ‘/home/wardersar/autobuild/building/sources/libccp4-6.5.1.tar.gz’ saved [947521/947521]

URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:49:50-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/mmdb2-2.0.22.tar.gz Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 737837 (721K) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/mmdb2-2.0.22.tar.gz’

mmdb2-2.0.22.tar. 100%[============>] 720,54K 1,06MB/s in 0,7s

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URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:50:02-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/ssm-1.4.tar.gz Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 426685 (417K) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/ssm-1.4.tar.gz’

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URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:50:09-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/fftw-2.1.5.tar.gz Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 1256888 (1,2M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/fftw-2.1.5.tar.gz’

fftw-2.1.5.tar.gz 100%[============>] 1,20M 1,54MB/s in 0,8s

2023-11-13 08:50:10 (1,54 MB/s) - ‘/home/wardersar/autobuild/building/sources/fftw-2.1.5.tar.gz’ saved [1256888/1256888]

URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:50:33-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/clipper-2.1.20180802.tar.gz Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 4238748 (4,0M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/clipper-2.1.20180802.tar.gz’

clipper-2.1.20180 100%[============>] 4,04M 1,52MB/s in 2,7s

2023-11-13 08:50:36 (1,52 MB/s) - ‘/home/wardersar/autobuild/building/sources/clipper-2.1.20180802.tar.gz’ saved [4238748/4238748]

URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:50:36-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/clipper-configure-2.patch Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 5888 (5,8K) Saving to: ‘/home/wardersar/autobuild/building/sources/clipper-configure-2.patch’

clipper-configure 100%[============>] 5,75K --.-KB/s in 0s

2023-11-13 08:50:36 (98,0 MB/s) - ‘/home/wardersar/autobuild/building/sources/clipper-configure-2.patch’ saved [5888/5888]

--2023-11-13 08:52:17-- https://ftp.gnu.org/gnu/readline/readline-6.3.tar.gz Resolving ftp.gnu.org (ftp.gnu.org)... 209.51.188.20, 2001:470:142:3::b Connecting to ftp.gnu.org (ftp.gnu.org)|209.51.188.20|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 2468560 (2,4M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/readline-6.3.tar.gz’

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URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:52:19-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/readline-5.1.patch Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 1665 (1,6K) [application/x-troff-man] Saving to: ‘/home/wardersar/autobuild/building/sources/readline-5.1.patch’

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URL transformed to HTTPS due to an HSTS policy --2023-11-13 08:52:37-- https://www.python.org/ftp/python/3.9.12/Python-3.9.12.tgz Resolving www.python.org (www.python.org)... 146.75.116.223, 2a04:4e42:14::223 Connecting to www.python.org (www.python.org)|146.75.116.223|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 26338472 (25M) [application/octet-stream] Saving to: ‘/home/wardersar/autobuild/building/sources/Python-3.9.12.tgz’

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--2023-11-13 08:56:29-- http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gmp/gmp-6.1.2.tar.bz2 Resolving www.mirrorservice.org (www.mirrorservice.org)... 212.219.56.184, 2001:630:341:12::184 Connecting to www.mirrorservice.org (www.mirrorservice.org)|212.219.56.184|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 2386766 (2,3M) [application/x-bzip2] Saving to: ‘/home/wardersar/autobuild/building/sources/gmp-6.1.2.tar.bz2’

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--2023-11-13 08:57:10-- http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/libtool/libtool-2.4.6.tar.gz Resolving www.mirrorservice.org (www.mirrorservice.org)... 212.219.56.184, 2001:630:341:12::184 Connecting to www.mirrorservice.org (www.mirrorservice.org)|212.219.56.184|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 1806697 (1,7M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/libtool-2.4.6.tar.gz’

libtool-2.4.6.tar 100%[============>] 1,72M 2,15MB/s in 0,8s

2023-11-13 08:57:11 (2,15 MB/s) - ‘/home/wardersar/autobuild/building/sources/libtool-2.4.6.tar.gz’ saved [1806697/1806697]

--2023-11-13 08:58:17-- http://www.mirrorservice.org/sites/ftp.gnu.org/gnu/gsl/gsl-1.16.tar.gz Resolving www.mirrorservice.org (www.mirrorservice.org)... 212.219.56.184, 2001:630:341:12::184 Connecting to www.mirrorservice.org (www.mirrorservice.org)|212.219.56.184|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 3534080 (3,4M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/gsl-1.16.tar.gz’

gsl-1.16.tar.gz 100%[============>] 3,37M 4,43MB/s in 0,8s

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--2023-11-13 08:59:42-- https://boostorg.jfrog.io/artifactory/main/release/1.74.0/source/boost_1_74_0.tar.gz Resolving boostorg.jfrog.io (boostorg.jfrog.io)... 100.21.156.46, 54.185.186.5, 44.226.59.123 Connecting to boostorg.jfrog.io (boostorg.jfrog.io)|100.21.156.46|:443... connected. HTTP request sent, awaiting response... 302 Location: https://jfrog-prod-usw2-shared-oregon-main.s3.amazonaws.com/aol-boostorg/filestore/10/107cebeec706988639cf2932fc0ce43200de4c0a?X-Artifactory-username=anonymous&X-Artifactory-repoType=local&X-Artifactory-repositoryKey=main&X-Artifactory-packageType=generic&X-Artifactory-artifactPath=release%2F1.74.0%2Fsource%2Fboost_1_74_0.tar.gz&X-Artifactory-projectKey=default&x-jf-traceId=4b7d0c6e91d6913c&response-content-disposition=attachment%3Bfilename%3D%22boost_1_74_0.tar.gz%22&response-content-type=application%2Fx-gzip&X-Amz-Security-Token=IQoJb3JpZ2luX2VjEPX%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLXdlc3QtMiJHMEUCICjJnDlnhke8ACF13y3zErmfae4JNIGknKD0lb0oOQkvAiEA0qB6AHsmFUFNwSt0rl7e4rx%2FpjYUoY3LkKerPJj6AxAqhgUIPhAAGgwxNTIxNTMwNjIxNDEiDLu9Kn%2FTzgNgJ6K5RyrjBMHjCTa%2BwUgvLKjg%2BgRcC956oyQS0JAiv4CfMOytnwuUINLWTWyQ6q2yvu1NaAsjU5WObuj0P6GB9WLPbKVKS9ir5hf4uZrIpba6ZsJ0Llz0iLZl14gzZJcvxtIYFQ3MtHKHoSG9oBZQvKpqzVCcpVGNpU7SDpI415KXYGrqCepkI6kyWaq9de2ovbNlVETQKxKxzCpGJJqfeZRhVcIjwQOSI7Y74I5WCKg3Qb40AgOQb1nanJoj48h2KbSMziXRQnzU6Oks%2Bk7jg3oxUxKNUTOhfvnV7RTW9VfF6UmLAnkiKDH31cFadd%2BCJ0FDQoO9BEo6%2FjvAOgecY0lFyYi%2BWh3Fl8jOVJj4i2raICcwVKtOG1RrMXQcN8%2F6QxU8McmxIc%2B8yVBM4FSxUDHaWmlMO%2FBnXm4%2BbMKzEJk52F7WmbOtbqpML4iOG9S%2B7qHljHK43thc8vZbY2TyyM%2FiOU6I47ChPfGmBjDoH63t8%2B%2FE4J9zAd6%2Bh%2BD4vNBmucA5tJbxf0foEQExiYvdbLs%2B4u%2FWprhsr%2F9vBBkFJTdWhfP45gxDJmjVEQw4woN4%2BDiSuNLsfeg%2BMRf%2FHIzmi3V2zmBVYqCXJqMcXVtmIhmdNErI9TNjtElAbV2IjaljIuNNc%2BYv%2FcrQRMmnB5%2BGQf3ds3LwK3X7EDOWCDffaHwWQOEW0niUUNKusgpbgTWo8HIu5UZLaTQD8Zmm7PAq3K0efqT%2F8e5H4qQRm%2FyiNk3rqp%2FHehY9uqGgODL%2BnShAtopIv7blOOklmu51%2F5ys6c%2Fn8Vyo2vUpGJjaILx%2B3pYMPqAHxxSfQKdtMNPixqoGOpoBILneyEhzkzlVRS4RI5ZF81Q8LBmoSUlI%2BmGIDkPkCxXQC2uqcE8Q0PYzstBfAZWRDH9BjGFLbO8j%2FW2OIyZRJnWI2pcL8xhIutlVwqW0db5ghN8PiohxZT4dJpNnaVBEkFBSJWKZcfUY7FAqbnQBcV7U%2FI22tgx8VoySfnsF9L9MQ3AzQOtqQS62TULp%2FHzCktQXzR4NrNyqbw%3D%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20231113T055941Z&X-Amz-SignedHeaders=host&X-Amz-Expires=30&X-Amz-Credential=ASIASG3IHPL6X7PSD3DC%2F20231113%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=c2cdb96c9b41531311140a4202c3e034c76a06cab66e1137e4de4080dfbdb9a3 [following] --2023-11-13 08:59:43-- https://jfrog-prod-usw2-shared-oregon-main.s3.amazonaws.com/aol-boostorg/filestore/10/107cebeec706988639cf2932fc0ce43200de4c0a?X-Artifactory-username=anonymous&X-Artifactory-repoType=local&X-Artifactory-repositoryKey=main&X-Artifactory-packageType=generic&X-Artifactory-artifactPath=release%2F1.74.0%2Fsource%2Fboost_1_74_0.tar.gz&X-Artifactory-projectKey=default&x-jf-traceId=4b7d0c6e91d6913c&response-content-disposition=attachment%3Bfilename%3D%22boost_1_74_0.tar.gz%22&response-content-type=application%2Fx-gzip&X-Amz-Security-Token=IQoJb3JpZ2luX2VjEPX%2F%2F%2F%2F%2F%2F%2F%2F%2F%2FwEaCXVzLXdlc3QtMiJHMEUCICjJnDlnhke8ACF13y3zErmfae4JNIGknKD0lb0oOQkvAiEA0qB6AHsmFUFNwSt0rl7e4rx%2FpjYUoY3LkKerPJj6AxAqhgUIPhAAGgwxNTIxNTMwNjIxNDEiDLu9Kn%2FTzgNgJ6K5RyrjBMHjCTa%2BwUgvLKjg%2BgRcC956oyQS0JAiv4CfMOytnwuUINLWTWyQ6q2yvu1NaAsjU5WObuj0P6GB9WLPbKVKS9ir5hf4uZrIpba6ZsJ0Llz0iLZl14gzZJcvxtIYFQ3MtHKHoSG9oBZQvKpqzVCcpVGNpU7SDpI415KXYGrqCepkI6kyWaq9de2ovbNlVETQKxKxzCpGJJqfeZRhVcIjwQOSI7Y74I5WCKg3Qb40AgOQb1nanJoj48h2KbSMziXRQnzU6Oks%2Bk7jg3oxUxKNUTOhfvnV7RTW9VfF6UmLAnkiKDH31cFadd%2BCJ0FDQoO9BEo6%2FjvAOgecY0lFyYi%2BWh3Fl8jOVJj4i2raICcwVKtOG1RrMXQcN8%2F6QxU8McmxIc%2B8yVBM4FSxUDHaWmlMO%2FBnXm4%2BbMKzEJk52F7WmbOtbqpML4iOG9S%2B7qHljHK43thc8vZbY2TyyM%2FiOU6I47ChPfGmBjDoH63t8%2B%2FE4J9zAd6%2Bh%2BD4vNBmucA5tJbxf0foEQExiYvdbLs%2B4u%2FWprhsr%2F9vBBkFJTdWhfP45gxDJmjVEQw4woN4%2BDiSuNLsfeg%2BMRf%2FHIzmi3V2zmBVYqCXJqMcXVtmIhmdNErI9TNjtElAbV2IjaljIuNNc%2BYv%2FcrQRMmnB5%2BGQf3ds3LwK3X7EDOWCDffaHwWQOEW0niUUNKusgpbgTWo8HIu5UZLaTQD8Zmm7PAq3K0efqT%2F8e5H4qQRm%2FyiNk3rqp%2FHehY9uqGgODL%2BnShAtopIv7blOOklmu51%2F5ys6c%2Fn8Vyo2vUpGJjaILx%2B3pYMPqAHxxSfQKdtMNPixqoGOpoBILneyEhzkzlVRS4RI5ZF81Q8LBmoSUlI%2BmGIDkPkCxXQC2uqcE8Q0PYzstBfAZWRDH9BjGFLbO8j%2FW2OIyZRJnWI2pcL8xhIutlVwqW0db5ghN8PiohxZT4dJpNnaVBEkFBSJWKZcfUY7FAqbnQBcV7U%2FI22tgx8VoySfnsF9L9MQ3AzQOtqQS62TULp%2FHzCktQXzR4NrNyqbw%3D%3D&X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Date=20231113T055941Z&X-Amz-SignedHeaders=host&X-Amz-Expires=30&X-Amz-Credential=ASIASG3IHPL6X7PSD3DC%2F20231113%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Signature=c2cdb96c9b41531311140a4202c3e034c76a06cab66e1137e4de4080dfbdb9a3 Resolving jfrog-prod-usw2-shared-oregon-main.s3.amazonaws.com (jfrog-prod-usw2-shared-oregon-main.s3.amazonaws.com)... 52.92.225.145, 52.92.224.121, 52.218.132.19, ... Connecting to jfrog-prod-usw2-shared-oregon-main.s3.amazonaws.com (jfrog-prod-usw2-shared-oregon-main.s3.amazonaws.com)|52.92.225.145|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 129348951 (123M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/boost_1_74_0.tar.gz’

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--2023-11-13 09:02:38-- https://download-fallback.gnome.org/sources/goocanvas/2.0/goocanvas-2.0.4.tar.xz Resolving download-fallback.gnome.org (download-fallback.gnome.org)... 121.127.45.81, 2a02:6ea0:f700::2 Connecting to download-fallback.gnome.org (download-fallback.gnome.org)|121.127.45.81|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 584272 (571K) [application/octet-stream] Saving to: ‘/home/wardersar/autobuild/building/sources/goocanvas-2.0.4.tar.xz’

goocanvas-2.0.4.t 100%[============>] 570,58K 1,34MB/s in 0,4s

2023-11-13 09:02:39 (1,34 MB/s) - ‘/home/wardersar/autobuild/building/sources/goocanvas-2.0.4.tar.xz’ saved [584272/584272]

--2023-11-13 09:02:56-- http://skuld.bmsc.washington.edu/raster3d/Raster3D_3.0-7.tar.gz Resolving skuld.bmsc.washington.edu (skuld.bmsc.washington.edu)... 128.95.235.53 Connecting to skuld.bmsc.washington.edu (skuld.bmsc.washington.edu)|128.95.235.53|:80... connected. HTTP request sent, awaiting response... 200 OK Length: 1729798 (1,6M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/Raster3D_3.0-7.tar.gz’

Raster3D_3.0-7.ta 100%[============>] 1,65M 382KB/s in 6,1s

2023-11-13 09:03:03 (277 KB/s) - ‘/home/wardersar/autobuild/building/sources/Raster3D_3.0-7.tar.gz’ saved [1729798/1729798]

URL transformed to HTTPS due to an HSTS policy --2023-11-13 09:03:23-- https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/glm-0.9.9.2.tar.gz Resolving www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)... 131.111.85.100 Connecting to www2.mrc-lmb.cam.ac.uk (www2.mrc-lmb.cam.ac.uk)|131.111.85.100|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 4572279 (4,4M) [application/x-gzip] Saving to: ‘/home/wardersar/autobuild/building/sources/glm-0.9.9.2.tar.gz’

glm-0.9.9.2.tar.g 100%[============>] 4,36M 1,66MB/s in 2,6s

2023-11-13 09:03:26 (1,66 MB/s) - ‘/home/wardersar/autobuild/building/sources/glm-0.9.9.2.tar.gz’ saved [4572279/4572279]

ls: cannot access '/home/wardersar/autobuild/Linux-wardersar-BBR-WAX9-gtk3/lib/python3.9/site-packages/numpy-*/numpy/lib/_version.py': No such file or directory guile-config - Guile version 2.2.7 Playing WAVE '/usr/share/sounds/speech-dispatcher/test.wav' : Signed 16 bit Little Endian, Rate 16000 Hz, Mono

Thank you!

WarderSar commented 6 months ago

Hello @WarderSar.

Please make sure that you are using the latest coot.rb file from @YoshitakaMo, mention later in that thread. Also note that almost all Homebrew users are using macOS.

The currently prefered method of installation of Coot 1.1 is this script: https://github.com/pemsley/coot/blob/main/build-it-3-3 If you want to try it, download from "Raw."

So my "build.log" is build.log

pemsley commented 6 months ago

There is some confusion. That was the output from an old build script, I think. Please try this one:

https://raw.githubusercontent.com/pemsley/coot/main/build-it-3-3