unable to lookup citation for http://openbiodiv.net/222C9E1B135454BEB7144BD7794FA01C

[jhpoelen]

Hi, I found that I was unable to lookup the meta data associated to article id http://openbiodiv.net/222C9E1B135454BEB7144BD7794FA01C from

{
  "_id": {
    "$oid": "5ef623fb97119b779a4e9aef"
  },
  "table_id": "<http://openbiodiv.net/2821CE5A-725F-4115-8905-164D97B61816>",
  "table_content": "<table id=\"TID0E6RCI\" rules=\"all\">\n  <tbody>\n    <tr>\n      <td rowspan=\"1\" colspan=\"1\">1</td>\n      <td rowspan=\"1\" colspan=\"1\"><bold>a</bold> Pronotum completely black, or only extreme upper and rear edges brown (Fig. <xref ref-type=\"fig\" rid=\"F17\">134</xref>); <bold>b</bold> Abdomen entirely black; <bold>c</bold> Mesepisternum more densely pubescent above than below but without extensive entirely glabrous area on lower half (Fig. <xref ref-type=\"fig\" rid=\"F17\">134</xref>); <bold>d</bold> Hind coxa with at least basal half black (Fig. <xref ref-type=\"fig\" rid=\"F17\">134</xref>); <bold>e</bold> Wing membrane hyaline; <bold>f</bold> Lancet with ca. 19 teeth (Fig. <xref ref-type=\"fig\" rid=\"F17\">136</xref>); <bold>g</bold> Penisvalve with ventral margin of paravalva not emarginate (Fig. <xref ref-type=\"fig\" rid=\"F17\">138</xref>); <bold>h</bold> Body length 5.0–6.5 mm Larval hosts: <italic><tp:taxon-name obkms_id=\"3CBB4159-E5CB-46F0-87F7-132D38EA7EB7\" obkms_process=\"TRUE\"><tp:taxon-name-part taxon-name-part-type=\"genus\" reg=\"Populus\">Populus</tp:taxon-name-part></tp:taxon-name></italic> spp., rarely on <italic><tp:taxon-name obkms_id=\"4C27C3CC-1535-4561-936D-877FD33F0D9B\" obkms_process=\"TRUE\"><tp:taxon-name-part taxon-name-part-type=\"genus\" reg=\"Salix\">Salix</tp:taxon-name-part></tp:taxon-name></italic></td>\n      <td rowspan=\"1\" colspan=\"1\">*<bold><italic><tp:taxon-name obkms_id=\"A98038EC-626F-4CAF-BDD5-10EE74DB7ADF\" obkms_process=\"TRUE\"><tp:taxon-name-part taxon-name-part-type=\"genus\" reg=\"Stauronematus\">Stauronematus</tp:taxon-name-part><tp:taxon-name-part taxon-name-part-type=\"species\" reg=\"platycerus\">platycerus</tp:taxon-name-part></tp:taxon-name></italic> (Hartig, 1840)</bold></td>\n    </tr>\n    <tr>\n      <td rowspan=\"1\" colspan=\"1\">—</td>\n      <td rowspan=\"1\" colspan=\"1\"><bold>aa</bold> Pronotum almost completely pale white or bright yellow, only ventral margins black (Fig. <xref ref-type=\"fig\" rid=\"F17\">135</xref>); <bold>bb</bold> Abdomen apically more or less pale: in ♀ at least hypopygial area pale brown, sometimes abdomen medially completely pale (yellow); in ♂ subgenital plate and harpes brown; <bold>cc</bold> Mesepisternum with an extensive glabrous area on lower half (Fig. <xref ref-type=\"fig\" rid=\"F17\">135</xref>); <bold>dd</bold> Hind coxa with only extreme base black (Fig. <xref ref-type=\"fig\" rid=\"F17\">135</xref>); <bold>ee</bold> Wing membrane slightly infuscate; <bold>ff</bold> Lancet with ca. 16 teeth (Fig. <xref ref-type=\"fig\" rid=\"F17\">137</xref>); <bold>gg</bold> Penisvalve with ventral margin of paravalva emarginate (Fig. <xref ref-type=\"fig\" rid=\"F17\">139</xref>); <bold>hh</bold> Body length 5.0–5.5 mm Larval host: <italic><tp:taxon-name obkms_id=\"F3CF7B23-FDB0-4B35-A78A-39C27AFF6118\" obkms_process=\"TRUE\"><tp:taxon-name-part taxon-name-part-type=\"genus\" reg=\"Salix\">Salix</tp:taxon-name-part><tp:taxon-name-part taxon-name-part-type=\"species\" reg=\"atrocinerea\">atrocinerea</tp:taxon-name-part></tp:taxon-name></italic>. <italic><tp:taxon-name obkms_id=\"A4883314-4FB0-4FC0-8EEE-14085A32207F\" obkms_process=\"TRUE\"><tp:taxon-name-part taxon-name-part-type=\"genus\" reg=\"Salix\">S.</tp:taxon-name-part><tp:taxon-name-part taxon-name-part-type=\"species\" reg=\"purpurea\">purpurea</tp:taxon-name-part></tp:taxon-name></italic> requires confirmation. Only known from Corsica and Sardinia</td>\n      <td rowspan=\"1\" colspan=\"1\">\n        <bold><italic><tp:taxon-name obkms_id=\"C1E63832-628B-46A2-A98C-9FA0C7796CEE\" obkms_process=\"TRUE\"><tp:taxon-name-part taxon-name-part-type=\"genus\" reg=\"Stauronematus\">Stauronematus</tp:taxon-name-part><tp:taxon-name-part taxon-name-part-type=\"species\" reg=\"saliciphilus\">saliciphilus</tp:taxon-name-part></tp:taxon-name></italic> Liston, 2007</bold>\n      </td>\n    </tr>\n  </tbody>\n</table>",
  "table_number": "TID0E6RCI",
  "article_doi": "10.3897/zookeys.875.35748",
  "annotations": [
    {
      "id": [
        "http://purl.obolibrary.org/obo/RO_0002453"
      ],
      "lbl": [
        "host"
      ],
      "length": [
        4
      ],
      "ontology": [
        "custom"
      ],
      "type": [
        "PROPERTY"
      ],
      "context": [
        "16 teeth (fig. 137); gg penisvalve with ventral margin of paravalva emarginate (fig. 139); hh body length 5.0–5.5 mm larval host: salixatrocinerea. s.purpurea requires confirmation. only known from corsica and sardinia"
      ],
      "is_synonym": [
        true
      ],
      "is_word": [
        true
      ],
      "row": [
        "2"
      ],
      "col": [
        "2"
      ],
      "position": [
        581
      ]
    }
  ],
  "caption_xml": "",
  "article_id": "<http://openbiodiv.net/222C9E1B135454BEB7144BD7794FA01C>"
}

@mdmtrv Is it expected that http://openbiodiv.net/222C9E1B135454BEB7144BD7794FA01C and association doi 10.3897/zookeys.875.35748 need some other method to resolve their related publication meta data?

Here's the associated openbiodiv queries that returned 0 results:

curl "http://graph.openbiodiv.net/repositories/OpenBiodiv2020?query=PREFIX%20fabio:%20%3Chttp://purl.org/spar/fabio/%3E%0APREFIX%20prism:%20%3Chttp://prismstandard.org/namespaces/basic/2.0/%3E%0APREFIX%20doco:%20%3Chttp://purl.org/spar/doco/%3E%0APREFIX%20dc:%20%3Chttp://purl.org/dc/elements/1.1/%3E%0ASELECT%20%20%20%20?article%20%20%20%20?title%20%20%20%20?doi%20%20%20%20(group_concat(distinct%20?authorName;%20separator=%22,%20%22)%20as%20?authorsList)%20%20%20%20%20(%20REPLACE(str(?pubDate),%20%22(%5C%5Cd*)-.*%22,%20%22$1%22)%20as%20?pubYear)%20%20%20%20?journalName%20WHERE%20%7B%20%0A%20%20%20%20BIND(%3Chttp://openbiodiv.net/222C9E1B135454BEB7144BD7794FA01C%3E%20AS%20?article).%20%0A%20%20%20%20?article%20a%20fabio:JournalArticle.%0A%20%20%20%20?article%20prism:doi%20?doi.%0A%20%20%20%20?article%20dc:title%20?title.%0A%20%20%20%20?article%20prism:publicationDate%20?pubDate.%0A%20%20%20%20?article%20%3Chttp://purl.org/vocab/frbr/core%23realizationOf%3E%20?paper.%0A%20%20%20%20?paper%20dc:creator%20?author.%0A%20%20%20%20?journal%20%3Chttp://purl.org/vocab/frbr/core%23part%3E%20?article.%0A%20%20%20%20?journal%20a%20fabio:Journal.%0A%20%20%20%20?journal%20%3Chttp://www.w3.org/2004/02/skos/core%23prefLabel%3E%20?journalName.%0A%20%20%20%20?author%20%3Chttp://www.w3.org/2000/01/rdf-schema%23label%3E%20?authorName.%0A%7D%20%20%20GROUP%20BY%20?article%20?title%20?doi%20?pubDate%20?journalName%20%0A%20LIMIT%201" 

resulted a blank result response:

article,title,doi,authorsList,pubYear,journalName

[mdmtrv]

Hi, the problem was on our end and has now been fixed. This happened because I had not fully processed the whole article yet (just that it contains a table) so the metadata was missing in the knowledge graph. Due to some parsing errors some of the articles did not go through the rdfization workflow so I am currently processing them again after making some fixes.

[jhpoelen]

Thanks! I confirmed that the issue was fixed.