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pepkit / caravel

A web GUI for pipeline job submission and management
http://caravel.databio.org
BSD 2-Clause "Simplified" License
5 stars 1 forks source link

loading projects is slow #136

Open nsheff opened 5 years ago

nsheff commented 5 years ago

using dev version, if I click "update all", and when caravel runs, I see this:

[2019-08-09 14:47:25,945] INFO in caravel: Using token from the URL argument
[2019-08-09 14:47:25,946] INFO in helpers: Using environment variable -- /home/ns5bc/caravel.yaml
[2019-08-09 14:47:25,950] WARNING in caravel_conf: 'projects' value is a list, not a dict
[2019-08-09 14:47:25,950] INFO in caravel_conf: Reformatting to the new config format: v0.2
[2019-08-09 14:47:26,086] WARNING in caravel_conf: Config lacks 'config_version' key
[2019-08-09 14:47:26,087] INFO in caravel_conf: Adding 'config_version' entry: 0.2
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
127.0.0.1 - - [09/Aug/2019 14:47:31] "GET /?token=PCAGK0JLCG6YRAA HTTP/1.1" 200 -
127.0.0.1 - - [09/Aug/2019 14:47:32] "GET /static/style.css HTTP/1.1" 200 -
[2019-08-09 14:47:43,545] INFO in caravel: Using the token from the session
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'epigenome_compendium'. Got: ''other''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/epigenome_compendium/metadata/pi.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'mitodyn'. Got: ''ATAC''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'mitodyn'. Got: ''ChIP''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'mitodyn'. Got: ''RNA-seq''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code/PEPATAC/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'meta_cancer'. Got: ''ATACseq''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'GSE86952'. Got: ''RRBS''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'dura_macs'. Got: ''ChIP''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
Ignoring nonexistent pipeline interface location: /home/ns5bc/code//open_pipelines/pipeline_interface.yaml
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'GSE129383'. Got: ''ATAC''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
The no_env_error argument has been deprecated. It will be removed in the next version of divvy
The no_compute_exception argument has been deprecated. It will be removed in the next version of divvy
/home/ns5bc/.local/lib/python3.6/site-packages/caravel/const.py:56: UserWarning: Could not determine file size for project: 'ppqc'. Got: ''GRO''
  warn("Could not determine file size for project: '{}'. Got: '{}'".format(p.name, e))
127.0.0.1 - - [09/Aug/2019 14:48:27] "GET /index?populate=True HTTP/1.1" 200 -
127.0.0.1 - - [09/Aug/2019 14:48:27] "GET /static/style.css HTTP/1.1" 304 -

I have downgraded that message so it only shows up on debug now, but the fact that it shows up hundreds of times is a problem. There is something not right with the way projects are loaded that is causing work to be repeated over and over again.

nsheff commented 5 years ago

Actually, just clicking "process" also does this. This has happened before... I think the project is getting reloaded a bunch of times inadvertently somehow. There should be no need to re-load the project when I click the "Process" tab