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pepkit / caravel

A web GUI for pipeline job submission and management
http://caravel.databio.org
BSD 2-Clause "Simplified" License
5 stars 1 forks source link

interface to geofetch #79

Open nsheff opened 5 years ago

nsheff commented 5 years ago

caravel could have a tab that provides access to geofetch functions.

stolarczyk commented 5 years ago

version 0.3?

stolarczyk commented 5 years ago

Ideas

  1. "geofetch" is a tab on the "add project" page which can be launched with a button click from the caravel splash page
  2. use --just-metadata first, then construct a metadata table and make user select the specific samples entries that should actually be downloaded (all are selected by default?)
  3. since geofetch strongly depends on sratoolkit we first need to check if prefetch command is callable and disable the "geofetch" tab, which when clicked, generates a warning (flash alert) with the info about the aforementioned requirement.