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pepkit / eido

Validator for PEP objects
http://eido.databio.org
BSD 2-Clause "Simplified" License
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Hitting an `ImportError` through indirect dependency on `eido` on Python 3.10 #67

Open vreuter opened 4 months ago

vreuter commented 4 months ago 
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../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/pypiper/__init__.py:6: in <module>
    from .manager import *
../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/pypiper/manager.py:32: in <module>
    from pipestat import PipestatError, PipestatManager
../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/pipestat/__init__.py:8: in <module>
    from .pipestat import (
../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/pipestat/pipestat.py:24: in <module>
    from .reports import HTMLReportBuilder, _create_stats_objs_summaries
../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/pipestat/reports.py:13: in <module>
    from eido import read_schema
../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/eido/__init__.py:7: in <module>
    from .conversion import *
../../../.cache/pypoetry/virtualenvs/looptrace-FyWUP9y7-py3.10/lib/python3.10/site-packages/eido/conversion.py:6: in <module>
    from pkg_resources import iter_entry_points
E   ModuleNotFoundError: No module named 'pkg_resources'
vreuter commented 4 months ago

Is this a known issue, perhaps with specific combinations of versions? I have this dependency through pypiper, in turn through pipestat.

nsheff commented 4 months ago

I don't have any insight into this off the top of my head. I don't think I wrote that. It will need to be investigated, I guess.

nsheff commented 4 months ago

Ah. pip install setuptools

probably should update this.

nsheff commented 4 months ago

I think it's because they removed setuptools from built-in python, creating a backwards incompatibility in some version of python.

vreuter commented 4 months ago

OK thanks @nsheff !

Ah. pip install setuptools

probably should update this.

Do you mean add setuptools to my environment, or rather update the packaging for eido? Another option would be to try to adopt one of these alternatives for the function in question here from setuptools.