pepkit / geofetch

Builds a PEP from SRA or GEO accessions
https://pep.databio.org/geofetch/
BSD 2-Clause "Simplified" License
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Created PEPs don't contain some of the information #106

Closed khoroshevskyi closed 1 year ago

khoroshevskyi commented 1 year ago

soft files contain some metadata under same key. geofetch creates list with every attribute and then unpack it to separate columns. While creating new columns it looses some of the data.

e.g. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM4217850 doesn't contain this information

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Additionally, if key contain two subkeys, only last will be saved..

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