V0.11.2 - Githubissues

pepkit / geofetch

Builds a PEP from SRA or GEO accessions

https://pep.databio.org/geofetch/

BSD 2-Clause "Simplified" License

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V0.11.2 #107

Closed khoroshevskyi closed 1 year ago

khoroshevskyi commented 1 year ago

New version of Geofetch. What was improved or fixed:

Changed sample_name of PEP of processed files to file oriented
Added --max-soft-size argument, that sets size limit of soft files
Added functionality that skips downloading GEO tables that are in soft files
Fixed bug of creating unwanted empty folders
Fixed problem with missing data
Logger
Documentation