Closed drejom closed 1 year ago
Indeed, that is a problem. I thought it was customizable with --filter-size
but it looks like that's only customizable for processed data, not raw data...
@Khoroshevskyi can you make this a configurable option? It should be pretty simple.
@nsheff i'm on a train but had put in a quick fix for this before leaving, just hadn't pushed changes
Thanks so much!! Back on track
Hi, This is an awesome suite of packages, very excited to try it out but hit a snag off the bat with a 10X dataset of 13 samples. With
geofetch -i GSE133181
, only 6 fastqs are fetched. The remainder are skipped because they exceed the (hard-coded?) limit:https://github.com/pepkit/geofetch/blob/cb1c4e4b5de05f84c666da720581e019658c4019/geofetch/utils.py#L84
Is it possible to override that somehow?