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pepkit / geofetch

Builds a PEP from SRA or GEO accessions
https://pep.databio.org/geofetch/
BSD 2-Clause "Simplified" License
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geofetch is changing sample_names where `+` and `-` are and changing it to underscore #127

Closed khoroshevskyi closed 9 months ago

khoroshevskyi commented 9 months ago

This issue causing problem: 

Sample /project/shefflab/resources//regions/all_geo_beds/bed_22_05_27/data/data/GSE151078/GSM4566032_macs2_k4_ISP_d2_39.bam_summits.bed.gz has sample_title value as a list: ['H3K4me3 - DP CD3- donor Th2', 'H3K4me3 - DP CD3+ donor Th2', 'H3K4me3 - DP CD3- donor Th2', 'H3K4me3 - DP CD3+ donor Th2']
khoroshevskyi commented 9 months ago

This issue was solved long time ago, now sample names contain + and -