pepkit / geofetch

Builds a PEP from SRA or GEO accessions
https://pep.databio.org/geofetch/
BSD 2-Clause "Simplified" License
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Prefetch check #133

Closed pedro-w closed 8 months ago

pedro-w commented 9 months ago

As discussed in #130 here is my idea for checking if prefetch is installed and on the path. It doesn't require command or where to be installed. I tested on Windows and Linux. Note I started this PR from the as-yet-unreleased V_0_12_6 branch therefore it shows quite a few diffs compared to master. The only file I changed was geofetch.py. Please can you have a check and see if it looks suitable? Thanks.