pepkit / geofetch

Builds a PEP from SRA or GEO accessions
https://pep.databio.org/geofetch/
BSD 2-Clause "Simplified" License
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Error in expanding metadata list #99

Closed khoroshevskyi closed 1 year ago

khoroshevskyi commented 1 year ago

While downloading GSE210523 Error happened:

Processing accession 1 of 1: 'GSE210523'
Processed 161 samples.
Expanding metadata list...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
expand_metadata_list: Key Error: 'Sample_relation', continuing ...
khoroshevskyi commented 1 year ago

Same here: GSE185968