Closed nsheff closed 1 year ago
-Clarified the docs to show that the sample_output_folder will use either the sample or project name. -Also removed mention of the pipeline_config as it seems that it now uses pep_config. -Moved variables that are paths to be under the paths sections.
See commit: https://github.com/pepkit/looper/commit/b0e5918c49c4564a2eb637ae4c8d2f9fbfd35c72
http://looper.databio.org/en/latest/variable-namespaces/
in the looper namespace:
sample_output_folder -- a sample-specific output folder (results_subdir/sample.sample_name)
provided for project pipelines or only sample pipelines?