Closed donaldcampbelljr closed 6 months ago
There are two commands: looper init-piface -> generates a pipeline interface
looper init-piface
pipeline_name: count_lines pipeline_type: sample output_schema: output_schema.yaml var_templates: pipeline: '{looper.piface_dir}/count_lines.sh' command_template: '{pipeline.var_templates.pipeline} {sample.file} --output-parent {looper.sample_output_folder}'
Is the desire that the above command would also generate an output_schema.yaml ?
output_schema.yaml
The 2nd command: looper init pep_config -> generates a looper config
looper init pep_config
pep_config: pep_path output_dir: output_dir pipeline_interfaces: sample: sample_pipeline_interface project: project_pipeline_interfaces,
However, this command does not involve an output_schema.
output_schema
Could you clarify the ask, @nsheff ?
would be nice to have an output schema that you could edit and use.
might have value in also spawning the count_lines.sh (as a generic pipeline)
There are two commands:
looper init-piface
-> generates a pipeline interfaceIs the desire that the above command would also generate an
output_schema.yaml
?The 2nd command:
looper init pep_config
-> generates a looper configHowever, this command does not involve an
output_schema
.Could you clarify the ask, @nsheff ?