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pepkit / looper

A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
20 stars 7 forks source link

looper rerun is not only running failed jobs, but everything #467

Closed nsheff closed 3 months ago

nsheff commented 7 months ago

Like the title says; on a new project with no flags, if I looper rerun, it's running them.

I was expecting it would only run jobs that had failed. the --help says:

Resubmit sample jobs with failed flags.

seems to indicate it wouldn't run if there wasn't a failed flag, so it's broken.

donaldcampbelljr commented 6 months ago

Should be solved with the above PR.