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pepkit / looper

A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
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Input PEP for Looper vs output PEP given to Pipestat #490

Closed donaldcampbelljr closed 1 week ago

donaldcampbelljr commented 1 month ago

Related to this Pipestat enhancement: https://github.com/pepkit/pipestat/issues/125

Can Looper easily distinguish between using an input pep and sending an output pep for results reporting via pipestat?

Pipestat now has the pephub_path parameter: psm = PipestatManager(pephub_path=pephuburl, schema_path=schema_file_path)

But it does not search for this via a config file (yet), so Looper may not be able to send this information to Pipestat at this time.

Previous discussion: we decided it best to keep the input PEP separate from the output PEP.

donaldcampbelljr commented 1 week ago

There isn't an actionable item from this issue at the moment, so I will close it for now.