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pepkit / looper

A job submitter for Portable Encapsulated Projects
http://looper.databio.org
BSD 2-Clause "Simplified" License
20 stars 7 forks source link

Remove printed dict at looper finish #511

Open donaldcampbelljr opened 3 weeks ago

donaldcampbelljr commented 3 weeks ago

Currently looper prints a statement in dict format for the commands/jobs submitted:

Looper finished
Samples valid for job generation: 2 of 2
{'Pipestat compatible': False, 'Commands submitted': '2 of 2', 'Jobs submitted': 2}

I believe this was originally implemented such that looper would return this dict so that our pytesting could analyze it for accuracy certain tests. However, we would like to remove seeing this in the CLI when running looper.

donaldcampbelljr commented 3 weeks ago

This is now fixed by removing sys.exit(main()) and simply running main(). This does not hinder pytest results.