PEPhub v0.12.0 sprint

[nsheff]

Project tracker: https://github.com/orgs/databio/projects/17

Main tasks

• [ ] Release PEPhub v0.12.0
• [ ] Release peppy v0.50.0
• [ ] Clean up old peppy milestones
• [ ] Release pipestat v0.10.0
• [ ] Release pepdbagent v0.9.0
• [ ] Release pepr v0.5.0 (with pephub support)
• [ ] Do a UI audit on the PEPhub interface

Major important improvements

• versioning system (https://github.com/pepkit/pephub/issues/130)
• ability to hold up to 5,000 rows
  • first: solve database updating issue. if that doesn't solve it, then go to peppy
• Showcase GEO->PEP archives: https://github.com/pepkit/pephub/issues/316
• Metadata standardizer v.1
• [sam] pep->R (pepr)
• [sam] selectable schemas (so you can validate against a different schema)
• pipestat-ready: https://github.com/pepkit/pipestat/issues/125
• pipestat report-ready: https://github.com/pepkit/pephub/issues/314
• add schemas to pephub: https://github.com/pepkit/pephub/issues/312
• release a few important datasets with PEPhub
• token management: https://github.com/pepkit/pephub/issues/313
• locking? https://github.com/pepkit/pephub/issues/309