Closed Eliott closed 5 years ago
Were you able to follow all of the steps to install the dependencies here?
If not, can you post the output of any errors you get when running those commands?
Thank you for the reply.
I followed the Debian instructions in the link and everything is installed OK. However, I wasn't able to install openjdk-7-jdk and instead had to install openjdk-8-jdk.
After running thirdparty/install_pepper_deps.sh, the following was written to std-err:
threads.c: In function ‘_papi_hwi_shutdown_global_threads’:
threads.c:461:16: warning: variable ‘our_tid’ set but not used [-Wunused-but-set-variable]
unsigned long our_tid;
^
papi_preset.c: In function ‘papi_load_derived_events’:
papi_preset.c:1058:6: warning: variable ‘preset’ set but not used [-Wunused-but-set-variable]
int preset = 0;
^
threads.c: In function ‘_papi_hwi_shutdown_global_threads’:
threads.c:461:16: warning: variable ‘our_tid’ set but not used [-Wunused-but-set-variable]
unsigned long our_tid;
^
papi_preset.c: In function ‘papi_load_derived_events’:
papi_preset.c:1058:6: warning: variable ‘preset’ set but not used [-Wunused-but-set-variable]
int preset = 0;
^
ar: creating libpapi.a
zero_omp.c: In function ‘main’:
zero_omp.c:118:6: warning: variable ‘maxthr’ set but not used [-Wunused-but-set-variable]
int maxthr, retval;
^
warning: no files found matching 'examples'
warning: no files found matching 'docs'
warning: no files found matching 'bin'
warning: no files found matching '*' under directory 'docs'
warning: no files found matching '*' under directory 'examples'
warning: no previously-included files matching '*.pyc' found under directory 'cheetah'
warning: no previously-included files matching '*~' found under directory 'cheetah'
warning: no previously-included files matching '*.aux' found under directory 'cheetah'
warning: no previously-included files matching '*~' found under directory 'docs'
warning: no previously-included files matching '*.aux' found under directory 'docs'
zip_safe flag not set; analyzing archive contents...
Cheetah.ImportManager: module references __file__
Cheetah.ImportManager: module references __path__
Cheetah.Template: module references __file__
Cheetah.ImportHooks: module references __file__
Cheetah.NameMapper: module MAY be using inspect.stack
/home/e/.local/lib/python2.7/site-packages/setuptools/command/bdist_egg.py:395: UnicodeWarning: Unicode equal comparison failed to convert both arguments to Unicode - interpreting them as being unequal
symbols = dict.fromkeys(iter_symbols(code))
Cheetah.Tests.Template: module references __file__
configure: WARNING: old version of Kyoto Cabinet was detected
HEAD is now at dc78fda... Update libff, libfqfft, gtest, xbyak submodule versions
error: patch failed: CMakeLists.txt:105
error: CMakeLists.txt: patch does not apply
I had also run:
cd buffetfsm/llvm-build ; make check-all
and got the following to std-out:
llvm[0]: Running test suite
make[1]: Entering directory '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/test'
Making LLVM 'lit.site.cfg' file...
Making LLVM unittest 'lit.site.cfg' file...
make -C /home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/test/../tools/clang/test lit.site.cfg Unit/lit.site.cfg
make[2]: Entering directory '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/tools/clang/test'
Making Clang 'lit.site.cfg' file...
Making Clang 'Unit/lit.site.cfg' file...
make[2]: Leaving directory '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/tools/clang/test'
make -C /home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/test/../tools/clang/tools/extra/test lit.site.cfg
make[2]: Entering directory '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/tools/clang/tools/extra/test'
Making lit.site.cfg for Clang extra tools...
make[2]: Leaving directory '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/tools/clang/tools/extra/test'
( ulimit -t 600 ; ulimit -d 512000 ; ulimit -m 512000 ; ulimit -s 8192 ; \
/usr/bin/python /home/e/Downloads/pequin/compiler/buffetfsm/llvm/utils/lit/lit.py -s -v . /home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/test/../tools/clang/test /home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/test/../tools/clang/tools/extra/test )
-- Testing: 18163 tests, 4 threads --
Testing: 0 .. 10.. 20.. 30.. 40.. 50.. 60.. 70.. 80.. 90
FAIL: LLVM-Unit :: ADT/Release+Asserts/ADTTests/APIntTest.LargeAPIntConstruction (17180 of 18163)
******************** TEST 'LLVM-Unit :: ADT/Release+Asserts/ADTTests/APIntTest.LargeAPIntConstruction' FAILED ********************
Note: Google Test filter = APIntTest.LargeAPIntConstruction
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from APIntTest
[ RUN ] APIntTest.LargeAPIntConstruction
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
0 libLLVM-3.5svn.so 0x00007f19c5386c45 llvm::sys::PrintStackTrace(_IO_FILE*) + 37
1 libLLVM-3.5svn.so 0x00007f19c5387092
2 libpthread.so.0 0x00007f19c4349390
3 libc.so.6 0x00007f19c32d5428 gsignal + 56
4 libc.so.6 0x00007f19c32d702a abort + 362
5 libstdc++.so.6 0x00007f19c390f84d __gnu_cxx::__verbose_terminate_handler() + 365
6 libstdc++.so.6 0x00007f19c390d6b6
7 libstdc++.so.6 0x00007f19c390d701
8 libstdc++.so.6 0x00007f19c390d919
9 libstdc++.so.6 0x00007f19c390debc
10 libstdc++.so.6 0x00007f19c390df19 operator new[](unsigned long) + 9
11 libLLVM-3.5svn.so 0x00007f19c53477a0 llvm::APInt::initSlowCase(unsigned int, unsigned long, bool) + 48
12 ADTTests 0x000000000049c44b
13 ADTTests 0x000000000060b721 testing::Test::Run() + 785
14 ADTTests 0x000000000060d050 testing::TestInfo::Run() + 816
15 ADTTests 0x000000000060d793 testing::TestCase::Run() + 451
16 ADTTests 0x0000000000616589 testing::internal::UnitTestImpl::RunAllTests() + 1353
17 ADTTests 0x000000000061602a testing::UnitTest::Run() + 106
18 ADTTests 0x0000000000627aa6 main + 70
19 libc.so.6 0x00007f19c32c0830 __libc_start_main + 240
20 ADTTests 0x000000000042bae9 _start + 41
********************
Testing: 0 .. 10.. 20.. 30.. 40.. 50.. 60.. 70.. 80.. 90
FAIL: LLVM-Unit :: ADT/Release+Asserts/ADTTests/APIntTest.nearestLogBase2 (17200 of 18163)
******************** TEST 'LLVM-Unit :: ADT/Release+Asserts/ADTTests/APIntTest.nearestLogBase2' FAILED ********************
Note: Google Test filter = APIntTest.nearestLogBase2
[==========] Running 1 test from 1 test case.
[----------] Global test environment set-up.
[----------] 1 test from APIntTest
[ RUN ] APIntTest.nearestLogBase2
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
0 libLLVM-3.5svn.so 0x00007f6120f9fc45 llvm::sys::PrintStackTrace(_IO_FILE*) + 37
1 libLLVM-3.5svn.so 0x00007f6120fa0092
2 libpthread.so.0 0x00007f611ff62390
3 libc.so.6 0x00007f611eeee428 gsignal + 56
4 libc.so.6 0x00007f611eef002a abort + 362
5 libstdc++.so.6 0x00007f611f52884d __gnu_cxx::__verbose_terminate_handler() + 365
6 libstdc++.so.6 0x00007f611f5266b6
7 libstdc++.so.6 0x00007f611f526701
8 libstdc++.so.6 0x00007f611f526919
9 libstdc++.so.6 0x00007f611f526ebc
10 libstdc++.so.6 0x00007f611f526f19 operator new[](unsigned long) + 9
11 libLLVM-3.5svn.so 0x00007f6120f607a0 llvm::APInt::initSlowCase(unsigned int, unsigned long, bool) + 48
12 ADTTests 0x000000000049d3ae
13 ADTTests 0x000000000060b721 testing::Test::Run() + 785
14 ADTTests 0x000000000060d050 testing::TestInfo::Run() + 816
15 ADTTests 0x000000000060d793 testing::TestCase::Run() + 451
16 ADTTests 0x0000000000616589 testing::internal::UnitTestImpl::RunAllTests() + 1353
17 ADTTests 0x000000000061602a testing::UnitTest::Run() + 106
18 ADTTests 0x0000000000627aa6 main + 70
19 libc.so.6 0x00007f611eed9830 __libc_start_main + 240
20 ADTTests 0x000000000042bae9 _start + 41
********************
Testing: 0 .. 10.. 20.. 30.. 40.. 50.. 60.. 70.. 80.. 90..
Testing Time: 473.68s
********************
Failing Tests (2):
LLVM-Unit :: ADT/Release+Asserts/ADTTests/APIntTest.LargeAPIntConstruction
LLVM-Unit :: ADT/Release+Asserts/ADTTests/APIntTest.nearestLogBase2
Expected Passes : 17976
Expected Failures : 99
Unsupported Tests : 86
Unexpected Failures: 2
Makefile:100: recipe for target 'check-local-all' failed
make[1]: Leaving directory '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/test'
/home/e/Downloads/pequin/compiler/buffetfsm/llvm/Makefile.rules:1809: recipe for target 'check-all' failed
and to std-err:
lit.py: lit.cfg:201: note: using clang: '/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/Release+Asserts/bin/clang'
lit.py: lit.cfg:329: note: Did not find clang-interpreter in /home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/Release+Asserts/bin:/home/e/Downloads/pequin/compiler/buffetfsm/llvm-build/Release+Asserts/bin
lit.py: discovery.py:190: warning: test suite 'Extra Tools Unit Tests' contained no tests
1 warning(s) in tests.
make[1]: *** [check-local-all] Error 1
make: *** [check-all] Error 2
The errors from building llvm for buffet shouldn't cause any problems for most computations, and the other build errors appear to be caused by running the install_pepper_deps.sh
script twice.
Looking back at the original error, it looks like zcc
is failing somewhere around here.
Can you try running these commands manually (starting from the pequin/compiler
directory) and posting the output? Or, maybe just comment out the exit 1
s in this block and running the original script again, since the Go code isn't actually required for the mm_pure_arith
example.
Alternatively, as a workaround, you could try running Ubuntu 14.04 in a virtual machine or use the build_docker.sh
script in this repo if you're familiar with Docker.
Thank you,
Running the commands manually, the command go build vericomp
worked OK, but go install vericomp/merkle/GenMerkle
returned the error code 2.
Commenting out the exit 1
s resulted in the following error:
...
# vericomp/hash/ggh
compile: reading input: EOF
Error: A JNI error has occurred, please check your installation and try again
Exception in thread "main" java.lang.ClassFormatError: Truncated class file
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:763)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:468)
at java.net.URLClassLoader.access$100(URLClassLoader.java:74)
at java.net.URLClassLoader$1.run(URLClassLoader.java:369)
at java.net.URLClassLoader$1.run(URLClassLoader.java:363)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:362)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:349)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at sun.launcher.LauncherHelper.checkAndLoadMain(LauncherHelper.java:495)
Makefile:113: recipe for target 'bin/mm_pure_arith.params' failed
make: *** [bin/mm_pure_arith.params] Error 1
...
This error occurs on line 246 of zcc. And running the "No optimize" else-branch resulted in the same error but on line 353.
The values of the variables when executing line 246 are:
Variable | Value |
---|---|
$TIMER | /usr/bin/time -o tmptime -f |
$classname | mm_pure_arith |
$javaargs | -Xmx1400M |
$compileropts | --verbose --bigconstraints --seed=12345 -OZAATAR -B10240 --defs mm_pure_arith.c.defines |
$inlining | m |
$path | mm_pure_arith.c |
Thank you again Max for the support.
Thank you Max for the help. I have it working now...
I tried 14.04 in a VM and was having trouble getting it to work there too, but after playing around a bit, I found it was because I didn't have pkg-config
installed (which caused install_pepper_deps.sh
to fail around here). After installing pkg-config
, everything worked on the VM.
I went back to 16.04 and explored the java.lang.ClassFormatError: Truncated class file
error some more and found that the frontend/bin/zcc/ZCC.class
file was actually empty. I deleted the bin
and gensrc
folders and recompiled the frontend
and got the class-file to generate (I don't know why it didn't compile correctly the first time).
I then got another error, the pepper/obj/libv/computation_p.o
was causing problems, so I deleted the obj
folder and then, finally, re-running ./pepper_compile_and_setup_V.sh
worked!
So I don't know what prevented these files from compiling correctly the first time, but it must have been something I done wrong. Anyway, it's all working for me now!
Thank you again for the support.
Glad you got it working! And thanks for the info.
Removing the files was good thinking, but you can also try running make clean-all
in the pepper directory to blow away everything, in case you run in to similar problems in the future.
I am following the GETTINGSTARTED.md tutorial and run the command:
./pepper_compile_and_setup_V.sh mm_pure_arith mm_pure_arith.vkey mm_pure_arith.pkey
..but it fails with the following error:
I have also tried a few of the other .c files in the "apps" folder, but they all give the same basic error.
I am running it on Ubuntu version 16.04.
What am I doing wrong? Thank you.