Check for program versions and command inconsistencies: for instance, BaseRecalibrator was introduced in GATK 2.0. EDIT: I'm thinking it's best not to elaborate too much on this part, but leave the responsibility of combining correct program versions to the end user. Otherwise, this can become overly complex.
Check for program versions and command inconsistencies: for instance, BaseRecalibrator was introduced in GATK 2.0. EDIT: I'm thinking it's best not to elaborate too much on this part, but leave the responsibility of combining correct program versions to the end user. Otherwise, this can become overly complex.