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percyfal / ratatosk

Apache License 2.0
17 stars 6 forks source link

Configuration improvements #28

Closed percyfal closed 11 years ago

percyfal commented 11 years ago

Configuration issues:

Read configuration file on startup, and not for every task as is currently the case
Variable expansion would be nice (e.g. $GATK_HOME)
Global section for globals, such as num_threads, dbsnp, etc?
percyfal commented 11 years ago

Fixed startup reading and variable expansion.

percyfal commented 11 years ago

Only remaining issue is whether or not to read configuration at startup only. Reading for every task is ok since small operation.