Sort out dependencies between IndelRealigner and

percyfal / ratatosk

Apache License 2.0

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Sort out dependencies between IndelRealigner and #5

Closed percyfal closed 11 years ago

percyfal commented 11 years ago

RealignerTargetCreator. Right now IndelRealigner depends on RealignerTargetCreator, and a source bam file name is calculated dynamically. Shouldn't the dependency really be on the bam file used as input for RealignerTargetCreator?