bamtools filter script does not resolve {{input.script}}

percyfal / snakemake-rules

Library of snakemake rules.

http://percyfal.github.io/snakemake-rules

MIT License

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bamtools filter script does not resolve {{input.script}} #12

Closed percyfal closed 8 years ago

percyfal commented 8 years ago

I don't even understand how I got this to work in the first place. Probably works if the dependencies exist, but not if the pipeline is run from scratch?

See https://github.com/percyfal/snakemake-rules/blob/master/snakemake_rules/bio/ngs/tools/_bamtools/bamtools_filter_script.rule#L6