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pereiramemo / AGS-and-ACN-tools

Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data
GNU General Public License v3.0
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SortMeRNA failed #12

Closed gc26762524 closed 2 years ago

gc26762524 commented 2 years ago

Hi, I am running the demo dataset and I found an error when running the run_acn.sh with

"${run_acn}" \ tara_023_srf_ags_output/tara_023_srf_FBL.fna \ tara_023_srf_ags_output/tara_023_srf_ags.tsv \ tara_023_srf_acn_output \ --sample_name tara_023_srf \ --evalue 1e-10 \ --min_identity 80 \ --min_length 30 \ --verbose t \ --overwrite t \ --nslots 2 \ --save_complementary_data t

I got the error:

Identifying 16S rRNA genes ... ERROR: -m [INT] must not exceed 1989 (Mbyte). SortMeRNA failed

I am in Mac and have downloaded the docker images. Please advise if you have any suggestions. Thank you in advance.

pereiramemo commented 2 years ago

Hi,

Other users also had this error. It is related to how Docker works in Mac. I am sorry, but the best solution is to use a Linux computer.

Best,

Emiliano