perishky / dmrff

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Memory issue when running dmrff #4

Open mirunabarbu8 opened 3 years ago

mirunabarbu8 commented 3 years ago

Hello! Thank you for a great package. I am running into an issue where there isn't enough memory when running dmrff. I have N=~700K CpG sites (EPIC array) and N=~6.5K individuals. I wondered whether it would be feasible for me to subset EWAS sumstats to only those CpGs with pval <= 0.05, and input only these CpGs in the dmr analysis.

Thank you!