perishky / meffil

Efficient algorithms for analyzing DNA methylation data.
Artistic License 2.0
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mysterious error trying to estimate cell counts from betas - please help? #22

Closed flopflip closed 4 years ago

flopflip commented 4 years ago

I have installed all prerequisites as per instruction manual. I am running R 3.6.2. on Ubuntu 19.10 and I get this error - is this still the openbals issue/workaround?

cellcounts<-meffil.estimate.cell.counts.from.betas(beta = B_t,cell.type.reference="blood gse35069 complete",verbose=T) Error in preprocessCore::normalize.quantiles.use.target(beta[subset, , : ERROR; return code from pthread_create() is 22