perishky
commented
7 years ago Thank you for letting us know. Indeed, there are two versions of EPIC microarrays, and Illumina has just released a unified annotation for both. That has now been incorporated into meffil as of yesterday. If you install the most recent version of meffil, then the problem should be solved. If you discover any problems, please let us know!
From: bartg01 notifications@github.com Sent: 26 May 2017 1:01 PM To: perishky/meffil Cc: Subscribed Subject: [perishky/meffil] Issue reading EPIC arrays (#3)
Dear developer I'm having problems using meffil.qc function when I try to read some EPIC arrays. I think the issue is exactly what is commented here https://groups.google.com/forum/#!topic/epigenomicsforum/Sj4iTz38K2g.
[http://www.google.com/images/icons/product/groups-128.png]https://groups.google.com/forum/#!topic/epigenomicsforum/Sj4iTz38K2g
Error when reading idat files into minfihttps://groups.google.com/forum/#!topic/epigenomicsforum/Sj4iTz38K2g groups.google.com Posted 2/9/17 12:49 PM, 9 messages
Minfi solved the issue by not being so strict during guess.chip function. Very nice package! Thanks!
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bartg01
Dear developer I'm having problems using meffil.qc function when I try to read some EPIC arrays. I think the issue is exactly what is commented here https://groups.google.com/forum/#!topic/epigenomicsforum/Sj4iTz38K2g. Minfi solved the issue by not being so strict during guess.chip function. Very nice package! Thanks!