meffil.ewas.summary with GDS

perishky / meffil

Efficient algorithms for analyzing DNA methylation data.

Artistic License 2.0

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Closed feichel closed 1 year ago

feichel commented 1 year ago

Hi!

Using a GDS file for meffil.ewas.summary does not seem to work:

Error in meffil::meffil.ewas.summary(ewas.object = res, beta = gds.filename,  : 
  is.matrix(beta) is not TRUE

All other functions that used this GDS file worked, so any clue, if this is on my end?

Thanks!

perishky commented 1 year ago

You did indeed uncover a bug in the code. Thank you! It should be fixed now.

feichel commented 1 year ago

Thank you for fixing it! It works now.