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perou-lab / MultiK

MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.
MIT License
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How to run multiK with multi-CPU core ? #3

Open Yoon-Seob-Kim opened 3 years ago

Yoon-Seob-Kim commented 3 years ago

Hello. I am trying to apply MultiK to figure out optimal clustering number for single-cell RNA sequencing (about 40,000 ten thousands cells ) Although i run the code with narrow resolution interval, it takes too many times to run. I found that MultiK analysis was being done with single core CPU. Is there any way for me to run multiK with multi-CPU core ?

Thank you.

siyao-liu commented 3 years ago

@kysbbubbu Hi Sorry about my late response. Yes, the current MultiK version is done on single core CPU and we are working on setting it up on multi-CPU core. It will take some time but it will be available in the future. Right now, you can try to run it on a cluster request big memory node to see if that will help! Thanks!

zhangdudu0 commented 1 day ago

If I repeat 100 times, the running time will be very long.