perslab CELLECT issues - Githubissues

perslab / CELLECT

CELLECT (CELL-type Expression-specific integration for Complex Traits)

GNU General Public License v3.0

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issues

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Error in rule make_annot

#96 Antidington opened 3 days ago
0
rule compute LD scores: numpy issue when running on a singularity image

#95 ElizabethWallace97 opened 3 months ago
0
Version changes

#94 ShadHOH opened 3 months ago
0
Error in run cellect-ldsc.snakefile

#93 ElizabethWallace97 closed 3 months ago
1
attributeerror

#92 inabro opened 4 months ago
0
SyntaxError in file, Unexpected keyword temp in rule definition

#91 LilyAndrews6 opened 8 months ago
0
error when run cellect-ldsc.snakefile

#90 frucelee closed 10 months ago
1
GWAS hg38 coordinate

#89 zhangpicb opened 1 year ago
1
Bug when running mtag_munge.py

#88 HouyuZhang closed 1 year ago
1
Error in run cellect-ldsc.snakefile

#87 jjzixue closed 1 year ago
4
can't get results with the error saying "some output files are missing"

#86 HGT-UwU closed 2 years ago
2
KeyError: u"None of [Int64Index

#85 wanghf0501 opened 2 years ago
1
:wq

#84 wanghf0501 closed 2 years ago
1
Allowed characters in annotation names/id

#83 pascaltimshel opened 2 years ago
1
Fix to make tutorial run again (annotation names, check_safe_id)

#82 pascaltimshel closed 2 years ago
1
cellect-genes.snakefile error (issue with the cellect_magma subworkflow)

#81 pascaltimshel opened 2 years ago
1
Error in git clone

#80 grimwoo closed 2 years ago
1
error: munge_ldsc installation in Windows 10

#79 grimwoo closed 2 years ago
1
Issue with dependencies?

#78 Hannahglover closed 2 years ago
4
Compute Enrichment score

#77 pascaltimshel opened 2 years ago
0
Only alphanumerics and single underscore allowed in config ids

#76 pvtodorov closed 3 years ago
1
MissingOutputException

#75 pvtodorov closed 3 years ago
2
Offline-mode available?

#74 demodw closed 3 years ago
1
Error in rule compute_LD_scores_all_genes:

#73 yuGithuuub opened 3 years ago
3
error using cellex esmu files

#72 JonnyBaseball opened 3 years ago
2
Update README.md

#71 JonThom closed 3 years ago
0
Exclude MHC doesn't apply to CELLECT-GENES

#70 Tobi1kenobi opened 3 years ago
0
Error Message when running - munge_sumstats.py

#69 ckrilow closed 3 years ago
2
Rule 'rule: # split_LD_scores' Breaks

#68 ckrilow closed 3 years ago
3
MissingOutputException in line 201 of ~/projects/CELLECT/cellect-ldsc.snakefile

#67 ckrilow closed 3 years ago
2
[BUG]: MissingOutputException in line 200 of /home/wbone/CELLECT/cellect-ldsc.snakefile: CELLECT-LDSC/precomputation/bed/genes_plus_100kb.1.bed not generated

#66 wpbone06 closed 3 years ago
4
Check specificity input for numeric values only

#65 pascaltimshel opened 3 years ago
0
Require snakemake 5.27 for speed improvement

#64 pascaltimshel closed 4 years ago
1
Error message when a special character is used for a cell-type/annotation

#63 Tobi1kenobi opened 4 years ago
0
Python conflict

#62 DaianeH closed 3 years ago
21
Update to MAGMA v1.08 (fix type 1 error rates for large genes)

#61 pascaltimshel opened 4 years ago
0
CELLECT-GENES runs the entire MAGMA subworkflow from scratch every time

#60 pascaltimshel opened 4 years ago
0
Distance of genes assigned to GWAS variants

#59 DaianeH closed 4 years ago
4
Remove example/config.yml

#58 pascaltimshel closed 4 years ago
0
Point file error

#57 verdurin closed 4 years ago
3
Diagnostics script for GWAS munging / SNP mapping

#56 pascaltimshel opened 4 years ago
1
Munged sample sizes not equal to input

#55 rrydbirk opened 4 years ago
0
ValueError: Index gene invalid

#54 rrydbirk closed 4 years ago
7
Exporting genes assigned to GWAS variants

#53 DaianeH closed 4 years ago
22
Add option to exclude MHC region for CELLECT-MAGMA

#52 pascaltimshel opened 4 years ago
0
Unify LDSC and MAGMA gene coordination files

#51 pascaltimshel closed 4 years ago
1
ERROR converting summary statistics

#50 satzel closed 4 years ago
7
WINDOW_LD_BASED analysis error

#49 fadista closed 4 years ago
2
Tabula Muris dataset

#48 fadista closed 4 years ago
2
Check GWAS input

#47 pascaltimshel closed 4 years ago
1