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perslab / CELLEX

CELLEX (CELL-type EXpression-specificity)
GNU General Public License v3.0
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Improve mapping documentation #20

Closed tstannius closed 4 years ago

tstannius commented 4 years ago

Problem

  1. The documentation is not clear on which genome build(s) are being used for mapping.
  2. Furthermore, the resources used from mapping are from different builds.

Solution

  1. Update documentation of mapping functions.
  2. Update the mapping files to be consistent.
pascaltimshel commented 4 years ago

genome builds: CELLEX gene ID and gene ortholog mapping do not have to be specific to one genome build, as long as the mapping covers as many as possible of the CELLECT gene universe. E.g. mapping ENSG to HGNC is not really dependent on the genome build.

documentation+ consistency of mapping: added in this commit to develop https://github.com/perslab/CELLEX/commit/80a34d205f384d891891bd4ec985ad631aa8bd0d

pascaltimshel commented 4 years ago

@tstannius : will you update the wiki to reference to the gene mapping functions?

tstannius commented 4 years ago

Done 👍