Using different tissue gene expression file in DEPICT

perslab / depict

DEPICT code, instructions and an example

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Using different tissue gene expression file in DEPICT #19

Open kkdey opened 4 years ago

kkdey commented 4 years ago

I am thinking of running DEPICT using a different tissue-specific gene expression Z data than the one that is used by DEPICT by default. However, I could not find a function that takes user-defined datasets for pathways and/or tissue expression. Is there a functionality to do so, and if so can you please guide me towards it?

Thanks so much.

tanyaphung commented 9 months ago

Hi @kkdey, have you figured out how to format a different RNAseq data to be used with DEPICT? If so, would you mind sharing? Thank you!