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perslab / depict

DEPICT code, instructions and an example
GNU General Public License v3.0
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No backgrounds have be precomputed for # yet #7

Open MikeDacre opened 7 years ago

MikeDacre commented 7 years ago

Got this error while running on a large dataset recently using the version from the website (not the github version):

Performing gene prioritization

Performing reconstituted gene set enrichment analysis

Nr. of unique genes to be used in the analysis: 18922
...............................................................................
Initial number of (potentially overlapping) loci:       366
Number of unique, non-overlapping loci: 364
Number of unique genes in the unique, non-overlapping loci:     1252
No backgrounds have been precomputed for 364 yet. Please contact Tune H. Pers (tunepers@broadinstituted.org).

Is there a way for me to compute the backgrounds myself or to get around this some other way without just deleting a chunk of the SNPs I am interested in?

SuhuaChang commented 5 years ago

Do you have get the answer for this? I met this problem too. Thanks!

lorettomunozvenegas commented 5 years ago

I also have this same problem. Any solution? Moreover, my sent email bounced when I sent tunepers@boradinstitute.org a message - as recommended.