CMScaller on Single cell Data

peterawe / CMScaller

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CMScaller on Single cell Data #6

Open AteeqMKhaliq opened 4 years ago

AteeqMKhaliq commented 4 years ago

Hi,

Is it possible to identify CMS subtypes for Single-cell data (Seurat object)? I am having ~ 50000 single cells data and using Seurat for the analysis. I am interested in CMS subtyping, is it possible to use CMScaller on single-cell and if yes how can I used Seurat object (counts) as an input. Thanks and regards Ateeq

kukumsh commented 4 months ago

I was thinking maybe I should make a pseudobulk data of the single-cell data. (Adding all the counts in cells to make bulk count for each gene)