Open petercombs opened 5 years ago
As a stopgap approach, I am doing something that is not quite right: I am skipping a base in the numerator of the K_{u,d,n} if it doesn't have at least 3 different bases. I should probably also skip it in the denominator, but that would require some pre-filtering, which I am not ready to think about over the weekend.
For instance, RET has only 2 bases tested at '573:
I'm not sure whether it biases things to skip only the missing G, or if I'd be better off marking that base as bad and dropping it from analyses altogether.