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peterjc / galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
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Manifests can point at local test-data folders now #150

Open peterjc opened 1 year ago

peterjc commented 1 year ago

As of #149, each tool has its own test-data/ folder (currently a symlink to the top level shared folder). This means the manifest no longer needs to point at the top level folder.

$ sed -i.bak "s#../../test-data/#test-data/#g" tools/*/.shed.yml
bernt-matthias commented 1 year ago

I would suggest to do this 1 PR per tool / tool collection. There will probably to many lint and test errors to keep it manageable, or?

peterjc commented 1 year ago

I think the strip components setting would explain the otherwise mystifying errors like this:

ValueError: Destination for 'test-data/four_human_proteins.fasta' should be a full filename!
peterjc commented 1 year ago

Seems 940f2235e493f9ce9a6af545831d1fefc0af8bf8 has not worked to skip problematic tests...