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peterjc / galaxy_blast

Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
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fix blast requirement #162

Open bernt-matthias opened 1 year ago

bernt-matthias commented 1 year ago

We just added this repo to the planemo monitor https://github.com/galaxyproject/planemo-monitor/pull/43 and I noticed that conda struggles to find a blast+ package

peterjc commented 1 year ago

This rings a bell, I think some systems ended up with blast meaning legacy BLAST (e.g. Debiain), and others BLAST+ (e.g. conda).

I don't know why the linting is complaining about no .shed.yaml file, do you fancy writing one?

bernt-matthias commented 1 year ago

no .shed.yaml file

True. So this thing never made it to the toolshed. The question is: should it?

peterjc commented 1 year ago

Good point. I never ended up using it personally (we have a local mirror of the NCBI databases on our cluster, updated monthly, and our Galaxy BLAST configuration just pointed at that), and am not in a position to even try it right now (we don't have a Galaxy server currently).