Wrap vsearch and usearch for UNOISE read-correction

peterjc / thapbi-pict

Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool

https://thapbi-pict.readthedocs.io/

MIT License

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Closed peterjc closed 1 year ago

peterjc commented 1 year ago

Alternatives to our built-in Levenstein UNOISE implementation, see #538

peterjc commented 1 year ago

Should in principle be able to use USEARCH/VSEARCH for chimera detection too...

peterjc commented 1 year ago

Must refresh the worked examples using denoising, this also changed the default from abundance based to distance based (currently about 4x slower).