Closed peterjc closed 8 months ago
The collaborators dataset isn't part of what we're using to automatically update https://github.com/peterjc/thapbi-pict/blob/v1.0.5/database/Oomycota_ITS1_obs.fasta thus adding it to the curated file
The 4bp difference means we'd not automatically import it via Oomycota_ITS1_obs.fasta
Follow on from #585.
Adding JQ610197 and JQ610199 (same sequence). We see something just 4bp different (with the assumed 32bp leader) in a collaborator's sample at an accepatable read depth.
Note the right primer GCARRGACTTTCGTCCCYRC match is poor:
We can make no guesses about the left primer binding as the sequences are missing the start.