peterjc / thapbi-pict

Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool
https://thapbi-pict.readthedocs.io/
MIT License
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Update NCBI import #588

Closed peterjc closed 5 months ago

peterjc commented 5 months ago

This was partly manual - The current search seems to miss a bunch of Phytophthora nicotianae ITS1 sequences (e.g. OP753715) but they are still available and can be found via different search terms. Specifically it seems they can't be found via the organism search field - suggesting a glitch in the Entrez index?

See also #587, would have needed to add ON130151 Peronospora gaponenkoae to the observed file but added it to the curated list yesterday.