Open peterjc opened 6 months ago
Olesen SW, Duvallet C, Alm EJ (2017) dbOTU3: A new implementation of distribution-based OTU calling. PLoS ONE 12(5): e0176335. doi:10.1371/journal.pone.0176335
See https://github.com/swo/dbotu3/blob/master/dbotu.py (Original, MIT licensed) https://pypi.org/project/dbotu/ v1.5.3 - not on bioconda or condaforge
And https://github.com/almlab/dbotu3 (more recent fork), but not on PyPI
My first impression is this is very like UNOISE but with an additional test on the ASV distribution over the samples.
Olesen SW, Duvallet C, Alm EJ (2017) dbOTU3: A new implementation of distribution-based OTU calling. PLoS ONE 12(5): e0176335. doi:10.1371/journal.pone.0176335
See https://github.com/swo/dbotu3/blob/master/dbotu.py (Original, MIT licensed) https://pypi.org/project/dbotu/ v1.5.3 - not on bioconda or condaforge
And https://github.com/almlab/dbotu3 (more recent fork), but not on PyPI
My first impression is this is very like UNOISE but with an additional test on the ASV distribution over the samples.