peterk87 / nf-villumina

Generic viral Illumina sequence analysis pipeline
MIT License
4 stars 5 forks source link

Flag and skip tiny read sets #11

Open peterk87 opened 4 years ago

peterk87 commented 4 years ago

If a FASTQ file is empty or contains less than X number of reads, then skip that read set and flag it in a final QC report. There's probably no need to attempt running analyses on very low numbers of reads.