Patch release for newer versions of Nextflow

[peterk87]

• minor fixes for 22.xx versions of Nextflow
• add skip_fastp option
• Update pipeline dependencies to latest versions
  • Update BLAST to 2.13.0 to fix issue with blastn search against 2022-07-31 release of nt DB
  • Use centrifuge-core instead of centrifuge from Bioconda to remove outdated Python dependency
• Update taxid list files for Bacteria and Viruses
• Use Mamba by default for conda profile
• bump pipeline version to 2.0.1