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petermr / CEVOpen

Contentmining of Open phytochemical literature for medicinal activities
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Project Strategy #27

Open petermr opened 4 years ago

petermr commented 4 years ago

CEVOpen

The CEVOpen project is based on:

all participants work on best endeavour - there are no formal contracts.

aims

There are a number of aims which have different weighting for different participants. Some may only work on their preferred interest; others will work on several aspects and create linking infrastructure.

show that Open Access can provide a critical mass of scientific knowledge.

create an intelligent knowledgebase

use semantic chemical technology (CML)

develop semantic ContentMine dictionaries

formalise activity data for plant oils in searchable form

show the value of automatically annotating semantic scientific articles

explore new science (patterns and relationships in data)

participants and interests

Please edit

All participlants are interested in collaborating.

ContentMine

NIPGR

(GY, AK, S-M, ?MK)

Verriclear Natural Skin Essentials Ltd. (aka. Verriclear)

EF - Emanuel Faria

Tiago

Development of automatic extraction of entities from articles.

Chem4Word

Blue Obelisk

(EgonW)

WHO have I missed?

EmanuelFaria commented 4 years ago

I just updated my own information.

Peter, what is our definition of "intelligent" as in "create an intelligent knowledgebase"?

Might I also suggest: "show the value of creating and adopting accepted formatting standards for scientific articles"

petermr commented 4 years ago

On Thu, Oct 3, 2019 at 6:55 PM Emanuel Faria notifications@github.com wrote:

I just updated my own information.

Peter, what is our definition of "intelligent" as in "create an intelligent knowledgebase"?

https://en.wikipedia.org/wiki/Artificial_intelligence This is (very) "weak AI" where because we have a large knowledgebase we can ask questions in the general area of plant oil chemistry. I am being somewhat adventurous here - anything we build will be very limited - but if you add ML to a large knowledgebase then we can hopefully start to get patterns emerging. But Gita and I put in a proposal last year on AI and the terpinome.

Might I also suggest: "show the value of creating and adopting accepted

formatting standards for scientific articles"

sure. Just add it.

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ambarishK commented 4 years ago

Sir, can we predict synergistic action of multiple extracts from different plants as PHF ( poly herbal formulation ). Many a times one compound or combinations of them synergises the activity of essential oil. On the other hand few compounds in combination makes the effect of essential oil feeble. Prediction of activity for PHF would be a good idea. ( this I am thinking as gone through multiple articles over essential oils and ocimum sanctum )

petermr commented 4 years ago

This is OUTSIDE CURRENT SCOPE. Until we have normalised the data any attempted science is a complete waste of time. You MUST stick to data extraction. You MUST NOT write articles about CEVOpen. Please acknowledge that you have received and understood this.

There is no scientific interpretation fo at least THREE months and maybe longer. Please

On Thu, Oct 3, 2019 at 9:26 PM Ambarish Kumar notifications@github.com wrote:

Sir, can we predict synergistic action of multiple extracts from different plants as PHF ( poly herbal formulation ). Many a times one compound or combinations of them synergises the activity of essential oil. On the other hand few compounds in combination makes the effect of essential oil feeble. Prediction of activity for PHF would be a good idea. ( this I am thinking as gone through multiple articles over essential oils and ocimum sanctum )

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/petermr/CEVOpen/issues/27?email_source=notifications&email_token=AAFTCS7K2LWIIVWSBBMP3ITQMZIP5A5CNFSM4I5ESNS2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEAJPQPA#issuecomment-538114108, or mute the thread https://github.com/notifications/unsubscribe-auth/AAFTCSYVKYBSLFRJOQI6GL3QMZIP5ANCNFSM4I5ESNSQ .

-- Peter Murray-Rust Founder ContentMine.org and Reader Emeritus in Molecular Informatics Dept. Of Chemistry, University of Cambridge, CB2 1EW, UK

ambarishK commented 4 years ago

Yes sir.

deadlyvices commented 4 years ago

I'm going to suggest that in the meantime I start work on a conceptual map of these building blocks of systems. Just to see how they all fit together. Then people who know a lot better than me will at least have something to comment on.

EmanuelFaria commented 4 years ago

I'm going to suggest that in the meantime I start work on a conceptual map of these building blocks of systems. Just to see how they all fit together. Then people who know a lot better than me will at least have something to comment on.

@deadlyvices did you see the concept map I posted today? (Sorry, from your user name I can’t tell if you were on the email chain. Nice to digitally meet you though!)

Sent with GitHawk

deadlyvices commented 4 years ago

Yes I did thanks. It looks really good. I'm downloading the tool now.

On Fri, Oct 4, 2019 at 10:43 PM Emanuel Faria notifications@github.com wrote:

I'm going to suggest that in the meantime I start work on a conceptual map of these building blocks of systems. Just to see how they all fit together. Then people who know a lot better than me will at least have something to comment on.

@deadlyvices https://github.com/deadlyvices did you see the concept map I posted today? (Sorry, from your user name I can’t tell if you were on the email chain. Nice to digitally meet you though!)

Sent with GitHawk http://githawk.com

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/petermr/CEVOpen/issues/27?email_source=notifications&email_token=ACM3QMUTDHDSP4TRAG2NDZDQM62JLA5CNFSM4I5ESNS2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEAM6ZEY#issuecomment-538569875, or mute the thread https://github.com/notifications/unsubscribe-auth/ACM3QMVOUVTKRUJC3IB4NETQM62JLANCNFSM4I5ESNSQ .

-- Clyde