Analyze `oil1000` for presence of components

petermr commented 4 years ago

oil1000 is a 1000 article offset of the Open Access subset retrieved with the query:

getpapers -q "((essential oil) AND (chemical composition))" -x -k 1000 -o oil1000

petermr commented 4 years ago

create spreadsheet (TSV) of components observed in each paper.

Possible headings:

articleID

PMCID

profiles

how many profiles as columns in tables are contained (may be 0)

plants

how many binomial names are associated with profiles or activities

country

which countries (2-letter codes) are involved in sample sources

extraction method

how is sample extracted (steam, Clevenger, microwave, etc.) create some abbreviations here and a CM dictionary

analysis method

GC/MS, etc. standardized abbreviations

activities

list of activities. Currently

AF antifungal
AH anthelmintic
AM antimicrobial
AO antoxidant
AV antiviral

ambarishK commented 4 years ago

Sir, does dictionary of 2100 compounds covers all essential oil compounds (apart from those 2100 mentioned into dictionary?

petermr commented 4 years ago

No - this is our core dictionary. I am hoping that we can get more chemical analysis

On Wed, Sep 11, 2019 at 8:04 AM Ambarish Kumar notifications@github.com wrote:

Sir, does dictionary of 2100 compounds covers all essential oil compounds (apart from those 2100 mentioned into dictionary?

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