Using Hypothes.is to annotate/tag test research articles in the Oil186 repository

[EmanuelFaria]

Using Hypothes.is to annotate/tag test research articles in the Oil186 repository

We are using the open-source Hypothes.is annotation tool to MANUALLY annotate/tag activities found in the test batch of research articles currently in the Oil186 repository so that...

• [Type of] User: @petermr
• can: train and test AMI and Content Mine to AUTOMATICALLY and ACCURATELY annotate/tag the terms found in other research articles, by referring to the individual dictionaries containing our keyword search terms.
• without: the need for further human interaction.

Goals: The Challenge, the solution we will bring, and the Desired End State by which all will know we have achieved excellence.

• The goal is to manually tag all activities found within the test articles (with reference to the activities in our existing dictionary), which will then be used to train tools for future automated processing.

Steps to achieve the Goal(s): The Challenge, the solution we will bring, and the Desired End State by which all will know we have achieved excellence.

1. Install an experimental Hypothesis client with support for controlled tagging
2. Create an account at Hypothes.is
3. Create a group within which all of our test article annotations will be saved — separately from the public or other groups. This is to make sure exporting doesn’t bring in extraneous data. (I called our DAVE)
4. Export the finished annotations/tags using the Hypothes.is annotation export tool which allows for viewing/exporting annotations.
5. Post here so @petermr can take next steps with them, and the world can see our results.

Desired Results: A clear and concise description / outline of the final "state or vision" of the project — the evidence we will see when our goals are achieved.

Excluding any activities found in articles under the heading “References”, I will tag the following in each section of each article in the OIL186 repository:

• activity
• activity_method
• activity_result
• table_no
• table_title

I will also add any new activities to our Activities Dictionary.

[EmanuelFaria]

This file is my first test export using the steps I outlined above. This test article was annotated in Hypothes.is in a group I named "Verriclear"

Hypothesis Test Annotation Export 2019-10-30.xlsx