ROTGRID/APA/Irregular and other pain in the a** Tables

[EmanuelFaria]

We need to create a way to make such tables machine readable.

[EmanuelFaria]

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5237462/

activity_result | table_no | tabletype | notes

3. Results and Discussion >> 3.1 Antioxidant Activity	Table 2	ROTGRID(OAP5+X)

4. Results and Discussion >> 3.4 Larvacidal Activity | Table 3 | ROTGRID(OAS*P7+X) | ROTGRID
5. Results and Discussion >> 3,3 Antimicrobial Activity | Table 4 | ROTGRID(OAS*P4) |  
6. Results and Discussion >> 3,3 Antimicrobial Activity | Table 5 | GRID(OAS*P4) |  
7. Results and Discussion >> 3.4 Larvacidal Activity | Table 6 | ROTGRID(OAS*P6) | Abnormal table.

[EmanuelFaria]

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype	notes	table_title	Table_footnote
PMC5324201	Antioxidant	Methods >> Antioxidant activity	Results >> Antioxidant activity on DPPH radical	Table 11	IRREG(OC2A*P8) ??	CHECK P VALUE because the Standard antioxidants seem to share values in their Dose and Log columns, but have individual columns for each of their Average percent values	Antioxidant activity of Anethum sowa L. root essential oil and standards	ASA Ascorbic acid, BHT Tert-butyl-1-hydroxytoluene, Mean ± SD
PMC5324201	Cytotoxicity	Methods >> Cytotoxic activity of brine shrimp lethality bioassay	Results >> Brine shrimp cytotoxicity assay	Table 12	APA(OCA*P8)		Effect of vincristine sulphate and essential oil of Anethum sowa L root on brine shrimp cytotoxicity assay	ASA Ascorbic acid, BHT Tert-butyl-1-hydroxytoluene, Mean ± SD
PMC5324201	Antimicrobial	Methods >> Antimicrobial activity test	Results >> Antimicrobial activity of Anethum sowa L. root essential oil	Table 13	APA(OC2AS10P5)		Anti-bacterial activity (Zone of Inhibition) of Anethum sowa L. root essential oil by diffusion method	CP Standard Ciprofloxacin (5 μg/disc), TE Standard Tetracycline (30 μg/disc)
PMC5324201	Antimicrobial	Methods >> Antimicrobial activity test	Results >> Antimicrobial activity of Anethum sowa L. root essential oil	Table 14	APA(OCA*P2)	I'm treating MIC and MBC as two parameters tested against one oil and one Control. I hope that’s correct.	Minimum inhibitory concentration (MIC) and Minimum bactericidal concentration (MBC) of Anethum sowa L. root essential oil and standard ciprofloxacin	Std. CP Standard Ciprofloxacin

[EmanuelFaria]

These tables are Bananas. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397855/

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4	Col5
PMC5397855	Insecticidal (EO Test)	MATERIALS AND METHODS >> Repellency test	METHODS >> Mortality test	Table 1	GRID(OC2AS3P4???	In this case S = Instect stage (Larva, Pupa, Adult). Also note the footnote says 2LC50 and 99 but the table results is 90, not 99). I don’t konw how to account for the two concentrations. Perhaps as two controls??		Lethal concentrations of the garlic essential oil against different developmental stages of Tenebrio molitor after 48 hours exposure.	1IS, insect stage; 2LC50 and 99, lethal concentration causing 50, 90 and 99% mortality; 3EV, estimated value; 4CI, confidential interval; 5X2, chi-squared value for the lethal concentrations and fiducial limits based on a log scale with significance level at P < 0.001.	1IS	2LC	3VE	4IC	5 X 2
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PMC5397855	Insecticidal (EO Constituents: diallyl sulfide and diallyl disulfide)	MATERIALS AND METHODS >> Repellency test	METHODS >> Mortality test	Table 3	GRID(O2AS3*???	Notes: O = EO constituents in this case, not a whole EO. S = Different life stages of the same species,		Lethal concentrations of the diallyl sulfide and diallyl disulfide on different developmental stages of Tenebrio molitor after 48 hours exposure.	1IS, insect stage; 2LC50 and 99, lethal concentration causing 50, 90 and 99% mortality; 3EV, estimated value; 4CI, confidential interval; 5X2, chi-squared value for the lethal concentrations and fiducial limits based on a log scale with significance level at P < 0.001.	Compounds	1IS	2LC	3VE mg mL −1	4IC mg mL −1

[EmanuelFaria]

APA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5412227/ https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5423258/

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)
5412227	Antimicrobial	Material and methods >> Minimum inhibition concentration (MIC) and minimal bactericidal concentration (MBC)	Results and Discussion >> Antimicrobial activity	Table 3	APA(OC2AS12P3)
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5423258	antimicrobial	Experimental >> Testing for antimicrobial activities	Results and Discussion >>	Table 4	APA(O3CA2S8*P2)

[EmanuelFaria]

APA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5454990/

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4	Col5	Col6	Col7
PMC5454990	Antibacterial and Cytotoxicity	Materials and Methods >> Antibacterial Assay	Results and Discussion >> Antimicrobial and Cytotoxic Activities	Table 3	APA(			Antimicrobial and cytotoxic activities of Ocotea essential oils and some major essential oil components. MIC, minimum inhibitory concentration; IC50, median inhibitory concentration.	P. aer (Pseudomonas aeruginosa), E. coli (Escherichia coli), S. epi (Staphylococcus epidermidis), S. aur (Staphylococcus aureus), B. cer (Bacillus cereus).	Material {oils and components}	P. aer	E. coli	S. epi	S. aur	B. cer	-MCF7.00
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[EmanuelFaria]

APA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5485486/

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4	Col5	Col6	Col7	Col8
5485486	Antibacterial	Material and Methods >> Bacterial Culturing Conditions >> MICs and MBCs Determination	Results >> Antibacterial Assays >> Determination of MIC and MBC	Table 3	APA(OC2AS3*P7)			Inhibition zone diameters (mm) of A. citriodora essential oils on bacterial strains.	∗AG: Agadir. BM: Beni Mellal. BE: Berkane. DE: Demnate. MA: Marrakech.	Bacterial strains	AG∗	BM∗	BE∗	DE∗	MA∗	Ceftriaxone	Ofloxacin
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[EmanuelFaria]

APA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5485486/ NOVELTY: This one has EO Origin as first (unnamed) column!

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4	Col5
PMC5485486	Cytotoxicity	Material and Methods >> Cytotoxicity Assay	Results >> Essential Oils Mediated Cell Cytotoxicity	Table 4	APA	This one has EO Origin as first (unnamed) column!		Minimal inhibitory concentrations (MIC) and minimal bactericidal concentrations (MBC) of A. citriodora essential oils.	∗AG: Agadir. BM: Beni Mellal. BE: Berkane. DE: Demnate. MA: Marrakech.	EO Origin	MIC	MBC	MIC	MBC
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[EmanuelFaria]

APA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5497343/ Tricky one. Although there are only 7k column headings, below he header, the first 5 are split into two columns each representing Oil and Control

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4	Col5	Col6	Col7
5497343	antibacterial	Antibacterial test >> Determination of antibacterial properties	Result >> MBC of the essential oil	Table 3	APA	Tricky one. Although there are only 7k column headings, below he header, the first 5 are split into two columns each representing Oil and Control		[table_titl Minimum inhibitory concentrations (MIC) of essential oil of T. minuta flower e]	Key: A = Essential oil, B = ciprofloxacin, + = Growth, − = no growth	Bacteria	0.5	0.25	0.125	0.06	0.03	MIC(mg/mL)
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5497343	Antibacterial (Bactericidal)	Antibacterial test >> Determination of antibacterial properties	Result >> MBC of the essential oil	Table 4	APA	Tricky one. Although there are only 7k column headings, below he header, the first 5 are split into two columns each representing Oil and Control		Minimum bactericidal concentrations (MBC) of essential oil of T. minuta flower	Key: A = oil, B = ciprofloxacin, + = Growth, − = no growth	Bacteria	0.5	0.25	0.125	0.06	0.03	MIC(mg/mL)
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[EmanuelFaria]

APA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543433/

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4
PM5543433	Antimicrobial	Antimicrobial activity >> Determination of MIC and MFC	Results and discussion >> Antimicrobial activities	Table 2	APA(OCAS9*P2)	Note: Includes Gram pos/neg separation rows I don’t know why there is only one MIC … unless the one for the control is a known quantity.		Antifungal activity of ClEO and determination of the Minimum Fungicidal Concentrations (MFCs) expressed in mg/ml	Values are given as mean ± S.D. of triplicate experiments aDiameter of inhibition zones of including diameter of disc 6 mm b EO Lemon citrus essential oil (50 μl/well) cThe used concentration of Gentamicin was 10 μg/well	Strains	EOb	Gentamicinc	MIC (mg/ml)
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[EmanuelFaria]

IRREG https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543433/ See notes

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4	Col5	Col6
5543433	pH value changes??	Methods >> Antioxidant testing assays >> DPPH radical scavenging activity	Results and discussion >> Antioxidant activities	Table 4	IRREG	??? Instead of a column heading, there are two below-the-header sections (similar to gram-pro/neg), to distinguish rows measuring pH and TBARS		Effect of ClEO and their combination with BHT on pH and TBARS (mg of malonaldehyde equivalents per kg of sample (mg/kg) of raw minced meat beef during storage at 4 °C	±: Standard Error a-dAverages with different letters in the same column, for each parameter, are different (P < 0.05); C (Control), T1 (EO: 0.06%), T2 (EO: 0.312%), T3 (BHT: 0.01%), T4 (EO 0.312% and BHT 0.01%)	??? Instead of a column heading, there are two below-the-header sections (similar to gram-pro/neg), to distinguish rows measuring pH and TBARS	0	2	4	8	10
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[EmanuelFaria]

... ok, now they're just screwing with us. SOO irregular https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5551175/

ID	activity (antimicrobial = antibacterial + antifungal)	activity_method	activity_result	table_no	tabletype_draft (Manny)	notes	tabletype_final (Peter)	table_title	Table_footnote	Col1	Col2	Col3	Col4
5551175	antitrypanosomal	??	Results and Discussion >> Inhibition of Trypanosoma brucei Proliferation : antitrypanosomal	Table 2	IRREG			Inhibitory effects of essential oils from Cameroonian plants against Trypanosoma brucei brucei TC221 and Balb/3T3 cells.	IC50: half maximal inhibitory concentration.	Treatment	T. b. brucei (TC221)	Balb/3T3	Selectivity Index (SI)
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[petermr]

Thanks for committing the images of tables; these will be useful and we can discuss