Open EmanuelFaria opened 4 years ago
A dictionary of [24] makes/models of Gas chromatography–mass spectrometry equipment used to identify different substances within a test sample — in this case, Essential Oils mentioned in the 186 test articles downloaded from PubMed.
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Description: A dictionary of [24] makes/models of Gas chromatography–mass spectrometry equipment used to identify different substances within a test sample — in this case, Essential Oils mentioned in the 186 test articles downloaded from PubMed.
Filename:Â instrument.xml
File Location:Â https://github.com/petermr/CEVOpen/blob/master/dictionary/instrument/raw/instrument.xml
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A dictionary of [24] makes/models of Gas chromatography–mass spectrometry equipment used to identify different substances within a test sample — in this case, Essential Oils mentioned in the 186 test articles downloaded from PubMed.
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Filename: instrument.xml
File Location: https://github.com/petermr/CEVOpen/blob/master/dictionary/instrument/raw/instrument.xml
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title: type of data to be normalized and tagged with Wikidata ID.
desc: data source / method of input
name: a human readable string describing the concept.
term: the precise string used to identify the concept. Name and Term are often the same.
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No. of source papers: 1
No. of Entries (Headers are not counted): 24
No. of unique entries (including alternate spellings or synonyms): 23
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I’m not sure if Gas chromatography–mass spectrometry equipment always go together, or if Gas chromatography can be one machine and mass spectrometry another.
I believe there are duplicates yet to be normalized
Potential errors: For example, I believe the Wiley references (lines 20 and
Once this dictionary is finalized, please update main description and the file location in this document and delete this note.
Currently all entries for “desc”...
are from one source
As of Jan 27,2020 this equipment list contains only 24 models. Should we need to train software by providing some makes/models, many can be found here:
Analytical chemistry studies and uses instruments and methods used to separate, identify, and quantify matter.[1] In practice, separation, identification or quantification may constitute the entire analysis or be combined with another method. Separation isolates analytes. Qualitative analysis identifies analytes, while quantitative analysis determines the numerical amount or concentration.
Analytical chemistry consists of classical, wet chemical methods and modern, instrumental methods.[2] Classical qualitative methods use separations such as precipitation, extraction, and distillation. Identification may be based on differences in color, odor, melting point, boiling point, radioactivity or reactivity. Classical quantitative analysis uses mass or volume changes to quantify amount. Instrumental methods may be used to separate samples using chromatography, electrophoresis or field flow fractionation. Then qualitative and quantitative analysis can be performed, often with the same instrument and may use light interaction, heat interaction, electric fields or magnetic fields. Often the same instrument can separate, identify and quantify an analyte.
(Source: https://en.wikipedia.org/wiki/Analytical_chemistry)
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Description: A dictionary of 117 entries describing instruments and methods used to separate, identify, and quantify matter, 105 being resolved to wikidata IDs, and 95 with short descriptions.
Filename: eoAnalysisMethod.xml
File Location: https://github.com/petermr/CEVOpen/blob/master/dictionary/eoAnalysisMethod/eoAnalysisMethod.xml
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id: serialized identification number
term: The name is a human readable string describing the concept.
acronym: standard abbreviations for the term
wikidataID: Unique identifier linked to Wikidata.org — a free and open knowledge base that can be read and edited by both humans and machines.
description: short description of the activity sourced from wikidata and/or wikipedia
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No. of entries (Headers are not counted): 117
No. of unique terms (including alternate spellings or synonyms): 117
No. of activities resolved in wikidata (including alternate spellings or synonyms): 105
Number of unique wikidata ids attributed to activities (normalizing for alternate spellings and synonyms): 78
No. of entries withoug wikidataid: 13
No. of entries with descriptions: 95
No. of entries without descriptions: 22
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Here we describe the process of creating a [DictionaryName]DictionaryDescription.md document, within which we will describe the contents of the individual dictionary (named in the title of this Issue), which was created (or is in the process of being created) from data collected for Oil186.
I will begin this thread by pasting the contents of the INDEX description, then follwed by first draft copy below for discussion and direction.