📕 Documentation: Dictionary.xml and DictionaryDescription.md of: eoExtractionMethod

[EmanuelFaria]

"Here we describe the process of creating a [DictionaryName]DictionaryDescription.md document, within which we will describe the contents of the individual dictionary (named in the title of this Issue), which was created (or is in the process of being created) from data collected for Oil186.

I will begin this thread by pasting the contents of the INDEX description, then follwed by first draft copy below for discussion and direction."

[EmanuelFaria]

EO Extraction and Chemical Analysis Methods

Equipment, methods and materials used for EO extraction

ExtractionAndChemicalAnalysisMethodsDictionaryDescription.md

• Description: A dictionary of 6 Methods of Essential Oil extraction and 6 Types of Chemical Analysis, mentioned in the 186 source articles for plant extracts being tested.

• Filename: methodAndAnalysisExtraction20191225.tsv

• File Location: https://github.com/petermr/CEVOpen/blob/master/articleAnalysis/oil186/raw/methodAndAnalysisExtraction20191225.tsv

[EmanuelFaria]

EOExtraction and Chemical Analysis Methods Dictionary

 

Description of Table and its Contents:

A dictionary of 6 Methods of Essential Oil extraction and 6 Types of Chemical Analysis, mentioned in the 186 source articles for plant extracts being tested.

 

File Data

• Filename: methodAndAnalysisExtraction20191225.tsv

• File Location: https://github.com/petermr/CEVOpen/blob/master/articleAnalysis/oil186/raw/methodAndAnalysisExtraction20191225.tsv

• Last Table Commit: Dec 31, 2019

 

 

Table Column Headings

• PMCID: Identification code for the article from which the data is being extracted. PubMed Central is an archive of full-text journal articles. The National Library of Medicine assigns a PMCID, also known as a PMC Identifier, to each full-text paper in PubMed Central.

• Method: Method of EO extraction performed to obtain the tested substance, as named in the article

• method_section_1: Method of EO extraction performed to obtain the tested substance, found in first section of article

• method_section_2: Method of EO extraction performed to obtain the tested substance, found in second section of article

• method_WIKIPEDIA: Method of EO extraction performed to obtain the tested substance, manually normalized to Wikipedia as reference.

 

• analysis_1: Acronyms found in the article, representing Type of chemical analysis performed

• analysis_1_WIKIPEDIA: Type of chemical analysis performed, manually normalized to Wikipedia as reference

• analysis_section_1: Semantic text related to Type of chemical analysis performed, found in section 1

• analysis_2: Acronyms found in the article, representing Type of chemical analysis performed, found in section 2

• analysis_2_WIKIPEDIA: Name of EO extraction method, manually normalized to Wikipedia as reference

• analysis_section_2:

 

Contents/Results

• No. of source papers: 186

• No. of Entries (The header is not counted): 186

• No. of EO Extraction Methods resolved in Wikidata: 6

• No. of Types of Chemical Analysis resolved in Wikidata: 6

• No. of source articles with no Method found: 74

• No. of source articles with no Analysis Type found: 64

 

Notes:

 

PETER:

I am not clear about what each of the “Section” columns are.

[EmanuelFaria]

@petermr Some updates:

1. ExtractionMethod.xml dictionary is now finished and working.
2. ExtractionMethodDictionaryDescription.md is updated
3. INDEXofOIL186Dictionaries.md is also updated
4. Just renamed this issue to match the now more specialized dictionary that relates to Extraction Methods only (Chemical Analysis methods will now be its own dictionary.

Here's what this dictionary now contains:

Extraction Method Dictionary

 

Description of Table and its Contents:

A dictionary of 73 terms for Essential Oil extraction methods.

 

File Data

• Filename: ExtractionMethod.xm

• File Location:

https://github.com/petermr/CEVOpen/blob/master/dictionary/ExtractionMethod/ExtractionMethod.xml

 

 

Table Column Headings

• DAVEid: DAVE.activity.n where n is a serialized number

• term: The name is a human readable string describing the concept.

• Acronym: The acronym for the term, if any.

• Apparatus: Apparatus used to conduct the extraction method described by the term.

• wikidataid: Unique identifier linked to Wikidata.org — a free and open knowledge base that can be read and edited by both humans and machines.

• description: short description of the activity sourced from wikidata and/or wikipedia

 

Contents/Results

• No. of Entries (The header is not counted): 73

• No. of terms describing EO Extraction Methods resolved in Wikidata: 71

• No. of unique Wikidata IDs (including synonyms): 37

• No. of entries with no Wikidata IDs: 2

• No. of source articles with no Analysis Type found: 64

[EmanuelFaria]

As of today, I believe this dictionary and it's description document are complete. Below I will copy the contents of the description document:

EO Extraction Method Dictionary

 

File Data

• Description: A dictionary of 87 terms for Essential Oil extraction methods and apparatus.

• Filename: eoExtractionMethod.xml

• File Location: https://github.com/petermr/CEVOpen/blob/master/dictionary/eoExtractionMethod/eoExtractionMethod.xml

 

Table Column Headings

• id: serialized identifier

• term: The name is a human readable string describing the concept.

• Acronym: The acronym for the term, if any.

• Apparatus: Apparatus used to conduct the extraction method described by the term.

• wikidataID: Unique identifier linked to Wikidata.org — a free and open knowledge base that can be read and edited by both humans and machines.

• description: short description of the activity sourced from wikidata and/or wikipedia

 

Contents/Results

• No. of Entries (The header is not counted): 87

• No. of terms describing EO Extraction Methods resolved in Wikidata: 71

• No. of unique Wikidata IDs (including synonyms): 37

 

Notes: